Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0715
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1057 + 23624454-23624954,23625582-23625971 31 0.34
01_01_0909 - 7163886-7163931,7164148-7164254,7164370-7164435,716... 29 1.4
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 28 3.2
05_06_0061 + 25274693-25274794,25274982-25275069,25275186-252752... 27 4.2
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238 27 5.6
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 27 7.3
11_03_0182 + 11307275-11307368,11307485-11307594,11307654-113078... 27 7.3
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 26 9.7
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005... 26 9.7
>07_03_1057 + 23624454-23624954,23625582-23625971
Length = 296
Score = 31.1 bits (67), Expect = 0.34
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 207 VTRTVWPAAVHRCKRPTLPSXAARCIXXPRLR 302
VTR V PAA+ R + P L + RCI PR R
Sbjct: 240 VTRGVPPAALKRIRDPELRAFIERCIGQPRNR 271
>01_01_0909 -
7163886-7163931,7164148-7164254,7164370-7164435,
7164720-7164784,7164937-7165000,7165685-7165794,
7165972-7166059,7166100-7166297
Length = 247
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 265 DGSVGRLHLWTAAGQT--VRVTXLAFRSADLSI 173
DGSV L LW AGQ R+ L++R AD+ I
Sbjct: 83 DGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFI 115
>02_02_0473 -
10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 236 PQVQAPDTPIXSCTMHXSPPPANRSSGEYRRS 331
PQV+ + PI +H PP R SG R+
Sbjct: 395 PQVEGDEPPIPLGALHDDPPTMRRRSGSSIRN 426
>05_06_0061 +
25274693-25274794,25274982-25275069,25275186-25275295,
25275542-25275605,25275713-25275777,25275864-25275929,
25276084-25276199,25276382-25276415
Length = 214
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 265 DGSVGRLHLWTAAGQT--VRVTXLAFRSADLSI 173
DG++ L LW AGQ R+ L++R AD+ +
Sbjct: 51 DGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 83
>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
Length = 472
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 214 VPSGPQLSTGASARHSHXQLHDAXLXPACEQVFGGISP 327
V P + GA H H L P +Q FGG SP
Sbjct: 365 VQPSPAAAAGAEHHHHHQIPMAQPLVPNLQQQFGGSSP 402
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 236 PQVQAPDTPIXSCTMHXSPPPANRSSGEYRRS 331
PQ Q P +P + +P PA G RRS
Sbjct: 172 PQQQRPSSPAVEAALRRAPDPACPRGGIQRRS 203
>11_03_0182 +
11307275-11307368,11307485-11307594,11307654-11307856,
11307879-11307964,11308861-11308934,11308936-11309078,
11309485-11309594,11309645-11309787
Length = 320
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 265 DGSVGRLHLWTAAGQT--VRVTXLAFRSADLSI 173
DG++ L LW AGQ R+ L++R AD+ +
Sbjct: 19 DGNIINLGLWGTAGQEDYSRLRILSYRGADIFV 51
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 26.2 bits (55), Expect = 9.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 89 EANGFYLGKLRGLLGDGNNEPYDDFRLPNGXICTSESEXGNAYRLARSCPQVQ 247
+ N LGK+R LL N+EP L G + S N++ ++R P +Q
Sbjct: 541 QENSSQLGKIRRLLFQNNDEPAGAISL--GTMELSHLRSLNSFGVSRLMPPLQ 591
>02_05_1357 +
35899480-35899578,35900247-35900334,35900438-35900592,
35900652-35900715,35902910-35902974,35903061-35903126,
35903644-35903745
Length = 212
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 265 DGSVGRLHLWTAAGQT--VRVTXLAFRSADL 179
DGS L LW AGQ R+ L++R AD+
Sbjct: 50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,936,464
Number of Sequences: 37544
Number of extensions: 176456
Number of successful extensions: 468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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