Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0715
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   5e-05
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   6e-05
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   31   0.27 
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.81 
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)                     29   1.4  
SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)                     27   4.3  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17)                   26   10.0 

>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 21/58 (36%), Positives = 34/58 (58%)
 Frame = +2

Query: 50  MVFCTSKLEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGXICTSESEXGNAYRL 223
           +V+ +++++V    AN F   +LRGL GD N E YD+F+ P G    +  +   A+RL
Sbjct: 6   VVYMSNRIQV---HANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +2

Query: 86   IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGXICTSESEXGNAYRL 223
            + AN F   +LRGL GD N E YD+F+ P G    +  +   A+RL
Sbjct: 1425 VHANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 122  GLLGDGNNEPYDDFRLPNGXICTSESEXGNAYRLARSCP-QVQAPDTPIXSC 274
            GLLG  NNE +D+   PNG    S  E  N++ +      Q+Q    P   C
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEVTNDTKCQIQRYIKPKSKC 1862


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 122 GLLGDGNNEPYDDFRLPNGXICTSESEXGNAYRL 223
           GLLG  NNE +D+   PNG    S  E  N++ +
Sbjct: 63  GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96


>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
          Length = 237

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 71  LEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNG 178
           L V +     FY G   GL GD +N P +DF  P G
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTG 221


>SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)
          Length = 244

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 134 DGNNEPYDDFRLPNGXICTSESEXGNAYRLARSCPQVQAPDTPI 265
           D N+    D  L    IC   +    + R  R+C +V  P  PI
Sbjct: 93  DSNSSGQSDVSLGEEAICNGNTHYSTSRRQPRNCRRVFPPKNPI 136


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 185  CTSESEXGNAYRLARSCPQVQAPDTPIXSCT 277
            CTS+           SCP+V  P  P+  C+
Sbjct: 1708 CTSQLSKDRQKECKESCPKVCGPGCPVQCCS 1738


>SB_18955| Best HMM Match : rve (HMM E-Value=5.9e-17)
          Length = 421

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 89  EANGFYLGKLRGLLGDGNNEPYDDFRLPNGXICT 190
           E N F L K  G   DG + P     LP G + T
Sbjct: 384 EVNAFELAKFLGNRSDGMSNPTYSLPLPGGLVDT 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,362
Number of Sequences: 59808
Number of extensions: 190767
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)