Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0715
         (401 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    29   1.5  
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    29   1.5  
At4g28950.1 68417.m04136 Rac-like GTP-binding protein (ARAC7) id...    28   2.0  
At4g38550.1 68417.m05458 expressed protein                             27   4.7  
At5g45970.1 68418.m05652 Rac-like GTP-binding protein (ARAC2) id...    26   8.2  

>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 146 EPYDDFRLPNGXICTSESEXGNAYRLARSCPQVQAP 253
           EPY    LPNG +   +SE  N Y+++ S      P
Sbjct: 84  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 146 EPYDDFRLPNGXICTSESEXGNAYRLARSCPQVQAP 253
           EPY    LPNG +   +SE  N Y+++ S      P
Sbjct: 22  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57


>At4g28950.1 68417.m04136 Rac-like GTP-binding protein (ARAC7)
           identical to rac GTP binding protein Arac7 GI:3702962
           from [Arabidopsis thaliana]
          Length = 209

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 271 AXDGSVGRLHLWTAAGQT--VRVTXLAFRSADLSI 173
           A DG +  L LW  AGQ    R+  L++R AD+ +
Sbjct: 48  AVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 82


>At4g38550.1 68417.m05458 expressed protein
          Length = 612

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 236 PQVQAPDTPIXSCTMHXSPPPANRSSGEYRRS 331
           P+  +P +P+     H  PPP    + ++RRS
Sbjct: 273 PRNSSPPSPLHPAASHSPPPPQPYRTPDHRRS 304


>At5g45970.1 68418.m05652 Rac-like GTP-binding protein (ARAC2)
           identical to RAC-like GTP binding protein ARAC2
           SP:Q38903
          Length = 201

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 265 DGSVGRLHLWTAAGQT--VRVTXLAFRSADL 179
           DGS   L LW  AGQ    R+  L++R AD+
Sbjct: 50  DGSTVNLGLWDTAGQEDYNRLRPLSYRGADV 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,384,634
Number of Sequences: 28952
Number of extensions: 124396
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)