Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0713
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      43   5e-05
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    32   0.078
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    32   0.078
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.7  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   6.7  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   6.7  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   6.7  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 21/67 (31%), Positives = 40/67 (59%)
 Frame = +1

Query: 517 IVSSILERDEKHSDILWNTAVVISDTGNVIGXHRKNHIPRVGDFYESNYYMGGNXXHPVF 696
           I+    E++EK S+I++N+ + I++ GN+ G +RK H+    D    ++  G +   P+F
Sbjct: 84  IIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHL---FDTERKHFKKGSD--FPIF 138

Query: 697 XTRYGKI 717
            T +GK+
Sbjct: 139 ETSFGKL 145


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +1

Query: 544 EKHSDILWNTAVVISDTGNVIGXHRKNH-----IPRVGDFYESNYYMGGNXXHPVFXTRY 708
           E+    L+NTA+V   +G +I  HRK H     IP    F ES+    G+    V  T Y
Sbjct: 129 ERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMV-DTEY 187

Query: 709 GKIXGG 726
           GK   G
Sbjct: 188 GKFGLG 193


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -3

Query: 483 KVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 304
           ++ V   S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 303 LTGR 292
           L GR
Sbjct: 290 LFGR 293


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +1

Query: 511  MVIVSSILERDEKHSDIL 564
            +++VS++LE DEKH D++
Sbjct: 998  LIVVSNLLEMDEKHVDVV 1015


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 556 PNASRPFLISRTRSPLVLDGEFPKEGRGRP 467
           P  ++P ++  T +   +D   PK GRGRP
Sbjct: 316 PPLNKPKILFGTSTENKIDENRPKRGRGRP 345


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 75  NNLTGRDLEEFNRIHFGRRNNLEI 146
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 45  ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 155
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,709
Number of Sequences: 5004
Number of extensions: 62203
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)