Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0713
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 113 1e-25
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 39 0.005
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 32 0.57
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 32 0.57
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 3.1
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 29 4.0
01_06_1292 - 36037741-36039306 29 5.3
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 7.1
06_03_0897 + 25762154-25763056,25764189-25764800 28 9.3
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 113 bits (272), Expect = 1e-25
Identities = 51/69 (73%), Positives = 55/69 (79%)
Frame = +1
Query: 511 MVIVSSILERDEKHSDILWNTAVVISDTGNVIGXHRKNHIPRVGDFYESNYYMGGNXXHP 690
MVIVS ILERD H +I+WNTAVVI + GN+IG HRKNHIPRVGDF ES YYM GN HP
Sbjct: 187 MVIVSPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHP 246
Query: 691 VFXTRYGKI 717
VF T YGKI
Sbjct: 247 VFETAYGKI 255
Score = 106 bits (255), Expect = 2e-23
Identities = 54/95 (56%), Positives = 65/95 (68%), Gaps = 5/95 (5%)
Frame = +2
Query: 239 PENCEVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ-----ELWNM 403
P VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q E W M
Sbjct: 93 PRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEAWTM 152
Query: 404 PFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKY 508
PFAFCTREK+ WCEFAE DG +T FL++LA KY
Sbjct: 153 PFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKY 185
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 544 EKHSDILWNTAVVISDTGNVIGXHRKNHIPRVGDFYESNYYMGGNXXHPVFXTRYGKIXG 723
E+ ++ +N+ +I G +G +RK+HIP + E Y+ G+ F T+Y I
Sbjct: 98 EEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATIGV 157
Query: 724 G 726
G
Sbjct: 158 G 158
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 335 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELA 499
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLA 85
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 397 PQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSYFTILGGRVCSSL 218
P+L E D VNTL + + LD + L+ + G RD + ++LG R+ SL
Sbjct: 525 PKLKECDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSL 584
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 397 PQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSYFTILGGRVCSSL 218
P+L E D VNTL + + LD + L+ + G RD + ++LG R+ SL
Sbjct: 521 PKLKECDIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSL 580
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 468 PSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 358
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 544 EKHSDILWNTAVVISDTGNVIGXHRKNHIPRV---GD--FYESNYYMGGNXXHPVFXTRY 708
E+ S L+NT VI G + HRK H+ + GD F ES+ + G + T
Sbjct: 67 ERSSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQEP-TIVDTDV 125
Query: 709 GKIXGG 726
G+I G
Sbjct: 126 GRIGIG 131
>01_06_1292 - 36037741-36039306
Length = 521
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 227 ADPTPENCEVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDV 352
ADP PE+C G I + T P + + +A F++ ++++
Sbjct: 449 ADPMPEHCPHGEFVREIPLATRIPEDAKLEAYFDEAAAVLEI 490
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 441 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 310
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>06_03_0897 + 25762154-25763056,25764189-25764800
Length = 504
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 391 VVEHALRVLHKGEAAVVRVCRIS*RRADHDLPSGTRHQVPMVIVSS-ILERDEKH 552
V++ LR+ G ++RVCR + + D+P GT MV+V+ + RD K+
Sbjct: 360 VIKETLRLHPPGPRLLLRVCRTTCQVLGFDVPKGT-----MVLVNMWAINRDPKY 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,009,041
Number of Sequences: 37544
Number of extensions: 454490
Number of successful extensions: 1316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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