Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0713
(761 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 30 2.4
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 29 3.1
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 29 3.1
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 4.1
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 29 4.1
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 28 7.2
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36) 28 9.5
SB_9767| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 154 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREL*SRNSSAFHRGAHRSSSQRAKE 315
K PR R S+SP SRP+ + P PR + RG+ RS S +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRR--TPEDRRRSRGSRRSPSPPKRE 1098
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 514 VIVSSILERDEKHSDILWNTAVVISDTGNVIGXHRKNH-----IPRVGDFYESNYYMGGN 678
++ SI ER L+NT++ +GN++G HRK H +P F ES G
Sbjct: 82 IVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE 139
Query: 679 XXHPVFXTRYGKIXGG 726
+ T Y KI G
Sbjct: 140 NL-TILDTEYCKIGIG 154
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = -2
Query: 724 HRESCRIWSXIQDAXCYXPCSSWIRKNRRLSE-CG-SCDVSRSRFRCH*L--QPQCSKVC 557
H+E+ R + I + C PC ++ + E C C C + +P+C K C
Sbjct: 399 HKETVRCYKDIYEVKCLEPCKDLLKCEHQCEELCAWKCRHHECTKLCGEICDRPRCDKPC 458
Query: 556 P 554
P
Sbjct: 459 P 459
>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 157 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 240
+PR + L+ S+SPHT R R+S DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 553 NASRPFLISRTRSPLVLDGEFPKEGRGRPVFS*FGKLAPRLLLPC 419
N+++ F + RS + DGE K GR FS KLA +L C
Sbjct: 382 NSAKSFTRNGARSIVRADGEERKFGRSEEEFSDLDKLAINILYDC 426
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 406 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 296
G VP + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 239 PENCEVGIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 373
P N V I VP + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 971 PNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 514 VIVSSILERDEKHSDILWNTAVVISDTGNVIGXHRKNH-----IPRVGDFYESNYYMGGN 678
++ SI ER L+NT++ +GN++G HRK H +P F ES G
Sbjct: 38 IVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE 95
Query: 679 XXHPVFXTRYGKIXGG 726
+ T Y KI G
Sbjct: 96 NL-TILDTEYCKIGIG 110
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 245 NCEVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELW 397
N ++ + H VP+ N + A K+ ++ VA Q +++C E W
Sbjct: 112 NSDISSINHPAVVPSLLVSNTRSLA--PKISELQCVASQNSADVVCITETW 160
>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
Length = 592
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 142 KSN*KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREL*SRNSSAFHRGAHRSSSQRA 309
++N K P+ L+ L TS L + DPR S N +A R H+S +Q A
Sbjct: 393 RTNRKMPQWLRTLILNWTSRVVLLHDVVVKTDPRRQMSFNPAAKRRTMHKSDNQSA 448
>SB_9767| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 142 KSN*KNPRSLQLRRLTSTSPH---TLSRPRTSRPDPREL*SRNSSAFHRGAHRSSSQRAK 312
K+N K + Q + + P+ TL R + P PRE S + F G HRS +
Sbjct: 4 KNNKKKKQEKQNKTKKTDHPNNRLTLGRGVLTGPPPREFFSGSPDQFRNGIHRSMEMDLE 63
Query: 313 ESN 321
+++
Sbjct: 64 DTS 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,594,709
Number of Sequences: 59808
Number of extensions: 502604
Number of successful extensions: 1432
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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