Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0712
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL132949-27|CAB61105.1|  209|Caenorhabditis elegans Hypothetical...    29   4.1  
Z80217-2|CAB02288.1|  209|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    28   9.5  

>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 298 LVGVDEGLSTREHAHLYISMNCLTTSTFMY 209
           L+G+D  L   EH    IS+N L T+TF Y
Sbjct: 406 LLGLDGSLIFLEHVFWVISLNTLFTATFAY 435


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 376 RSPHENIEVLSVVEDSEDFD 317
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>AL132949-27|CAB61105.1|  209|Caenorhabditis elegans Hypothetical
           protein Y53F4B.31 protein.
          Length = 209

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -1

Query: 472 GQVETLAVGSVEARGSKSVDEHAXVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 293
           GQV  L V   +   S ++  +   + F +  ++P E +   ++V+  +DF G F   ++
Sbjct: 51  GQVPYLTVDGFDIPQSAAIIRYL-ANKFGYAGKTPEEQVWADAIVDQFKDFMGSFRERIM 109

Query: 292 GVDEGLSTREHAHL 251
               G S  E A +
Sbjct: 110 AHFAGKSQEEIAKI 123


>Z80217-2|CAB02288.1|  209|Caenorhabditis elegans Hypothetical
           protein F37B1.2 protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -1

Query: 472 GQVETLAVGSVEARGSKSVDEHAXVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 293
           GQ+  L V   E   S ++  +     F    ++P E   V +VV+  +DF G F   ++
Sbjct: 51  GQMPVLNVDGFEIPQSAAITRYL-ARKFGFAGKTPEEEAWVDAVVDQFKDFFGEFRKLII 109

Query: 292 GVDEGLSTRE 263
               G S  E
Sbjct: 110 AQRAGKSVEE 119


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 171 IAKEYNIEKSCDKYMNVDVVKQ 236
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 171 IAKEYNIEKSCDKYMNVDVVKQ 236
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,535,239
Number of Sequences: 27780
Number of extensions: 307895
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)