Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0711
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 190 2e-49
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 105 5e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 1e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 92 7e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 65 1e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 6e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 48 9e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.012
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.44
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 1.8
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 1.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.1
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce... 25 7.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 190 bits (462), Expect = 2e-49
Identities = 94/132 (71%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKA 435
GDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+
Sbjct: 55 GDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKS 114
Query: 436 NREKMXXIMFETFYTPAMYVAIXAGLSLYASGRTPVSCWTXAXVXSTTWPIXKG-THPPR 612
NREKM I+FETF PA YVAI A LSLYASGRT + T PI +G P
Sbjct: 115 NREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHA 174
Query: 613 HLRLDFSGXDFT 648
+RLD +G D T
Sbjct: 175 IMRLDLAGRDLT 186
Score = 109 bits (261), Expect = 4e-25
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +2
Query: 98 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSY
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSY 53
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 105 bits (252), Expect = 5e-24
Identities = 46/104 (44%), Positives = 72/104 (69%)
Frame = +1
Query: 220 RDGRYGTEGLL*GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 399
+ G + ++ GDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 400 VLLTEAPLNPKANREKMXXIMFETFYTPAMYVAIXAGLSLYASG 531
+LLTE P+NP ANREKM MFE + +YVAI A LSLYA G
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQG 146
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 104 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 208
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.5 bits (232), Expect = 1e-21
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Frame = +1
Query: 256 GDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPK 432
G EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL
Sbjct: 59 GSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANI 118
Query: 433 ANREKMXXIMFETFYTPAMYVAIXAGLSLYASGRTPVSCWTXAXVXSTTWPIXKGTHPPR 612
N+EK+ +ET PA+ ++ L+LYAS RT + + PI G P
Sbjct: 119 RNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPS 178
Query: 613 HLRL-DFSGXDFT 648
++ + G D T
Sbjct: 179 AIQQEEIGGRDVT 191
Score = 59.7 bits (138), Expect = 4e-10
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +2
Query: 116 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMF 57
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 91.9 bits (218), Expect = 7e-20
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 GDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 432
G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP
Sbjct: 77 GNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPP 136
Query: 433 ANREKMXXIMFETFYTPAMYVAIXAGLSLYAS 528
NRE IMFE+F +Y+A+ A L+L AS
Sbjct: 137 ENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +2
Query: 116 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSY 253
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSY 54
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = +1
Query: 286 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMXXIMF 465
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 466 ETFYTPAMYVAIXAGLSLYASGR 534
E+ PA Y+A + +ASG+
Sbjct: 123 ESLRCPATYLAKQETCAAFASGK 145
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 101 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 202
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 55.6 bits (128), Expect = 6e-09
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +1
Query: 220 RDGRYGTEGLL*GDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 396
RD + L G++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 397 PVLLTEAPLNPKANREKMXXIMFETFYTPAMYVAIXAGLSLY 522
P+ +TE NP R M ++FE + P++ I S Y
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 116 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 211
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 48.4 bits (110), Expect = 9e-07
Identities = 20/76 (26%), Positives = 41/76 (53%)
Frame = +1
Query: 310 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMXXIMFETFYTPAM 489
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 490 YVAIXAGLSLYASGRT 537
Y+ A +A+ ++
Sbjct: 134 YLTKQAVCVAFANSKS 149
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 101 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 202
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.012
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +1
Query: 301 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMXXIMFE 468
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 469 TFYTPAMYVAIXAGLSLYASG 531
P +A + LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 333 IPVSDDSVFDGVFEGQDTSFALCLISS*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 154
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 153 PALHIP 136
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 361 FYNELRVAPEEHPVLLTE--APLNPKANREKMXXIMFETFYTP 483
+Y L E+HP+LLT+ A L P+ + ++ I ++ TP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Frame = +1
Query: 337 MEKIWHHTFYNELRVAPEEHPVLL---TEAPLNPKANREKMXXIMFETFYTPAMYVAIXA 507
+E + T Y +A E P LL +E PL I + Y+P Y +
Sbjct: 278 IESLSKRTIYAHPSIAKEIQPELLDLQSEMPLQTAVFMFTSSLINHDLIYSPQFYAILIE 337
Query: 508 GLSLYAS 528
+SLY +
Sbjct: 338 SVSLYGT 344
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 231 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 97
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 237 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 145
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 251 KSPSVPYRPSRPDGGAFPRSRGTR 180
K+PS PY SRP A S TR
Sbjct: 312 KAPSYPYSSSRPSASASLASSPTR 335
>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 645 EVATGKVKTQMPWGMRTLRNGPRCGXHXRGSPARY 541
E+ GKVK ++P G NG R G RY
Sbjct: 118 ELDLGKVKLRLPGGSHRGHNGIRSCQEFLGKEVRY 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,027
Number of Sequences: 5004
Number of extensions: 55508
Number of successful extensions: 144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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