Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0709
         (305 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.43 
SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)                 25   9.2  

>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 157 NPRSLQLRRLTSTSPHTLXRPRTSRPDP 240
           +PR + L+   S+SPHT  R R+S  DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714


>SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)
          Length = 273

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 72  NNNLTGRDLEEFNRIHFGRRNNLE 143
           N+N T + +E  NR  F R NNLE
Sbjct: 241 NSNYTVQIMERENRKMFSRANNLE 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,075,452
Number of Sequences: 59808
Number of extensions: 118090
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)