Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0709
         (305 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    29   0.82 
At3g15340.1 68416.m01936 expressed protein                             27   3.3  
At3g02130.1 68416.m00180 leucine-rich repeat transmembrane prote...    26   5.7  
At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...    25   7.6  

>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 100 KSSTEFILGGGITLKSN*KNPRSLQLRRLTSTSPHTLXR-PRTSRPDPXEL*SRNSSAFH 276
           K+ST     GG T KS+ +N  +   +  T ++  T  R PR  RP P  + S++S    
Sbjct: 290 KNSTNRNSQGGETAKSSNRNKLNSSTKPNTPSASSTATRNPRKKRPIPSSIKSKSSDDEA 349

Query: 277 RGAHR 291
           + + R
Sbjct: 350 KSSER 354


>At3g15340.1 68416.m01936 expressed protein
          Length = 487

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 143 FKVIPPPKMNSVELF 99
           F+V+PPP+MN + LF
Sbjct: 11  FEVVPPPEMNDLVLF 25


>At3g02130.1 68416.m00180 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: Eukaryotic
           protein kinase domain
          Length = 985

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 63  SIINNNLTGRDLEEFNRIH 119
           SI NNNLTG+  + F ++H
Sbjct: 499 SIANNNLTGQIPQSFGQLH 517


>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 239 PXNCEVGIVQHSIAVPTDXP 298
           P    VG++Q+SIA+PT  P
Sbjct: 87  PRVVRVGLIQNSIALPTTAP 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,651,424
Number of Sequences: 28952
Number of extensions: 84917
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)