Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0707
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   7.8  

>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 663 IVFGIKTADSXTPVN--HYQIVVSNRDAVVFPEDR 565
           I  GI  A + TP+   HY  V + R+ V+ PEDR
Sbjct: 374 IGIGIVLAGACTPIIYVHYNRVYTRRNGVMSPEDR 408


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +1

Query: 574 WKYY-GITVTDDNLVVIDWRXGVRRL---YPKNDVMSH 675
           W Y  GI V DD + + DWR  +       P +++M H
Sbjct: 317 WNYLSGIAVLDDRIAMHDWRLDLASFDIHGPDSNIMLH 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,102
Number of Sequences: 5004
Number of extensions: 55040
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)