Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0707
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)                      30   2.7  
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                29   4.8  
SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0)                29   4.8  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         29   6.3  

>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
 Frame = +2

Query: 389 EXGSTEACSSTLLLPRASTEPTARV---STCPLLTRSIPTSSLQPCSSVKP 532
           E  ST   +ST++ P ++ EPT+ V   ST    +  +PTS+++P S+V+P
Sbjct: 150 EPTSTVVPTSTVV-PTSTVEPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEP 199



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +2

Query: 431 PRASTEPTARV---STCPLLTRSIPTSSLQPCSSVKP 532
           P ++ EPT+ V   ST    +  +PTS+++P S+V+P
Sbjct: 139 PTSTVEPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEP 175


>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 566

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 540 HHKGFTDEHGC-NEEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPXSHPARSPHE 364
           H   FTDE G  N    +  +R+G  +  A G+  A  S+    H+ V   +  AR P E
Sbjct: 483 HLNLFTDEGGTYNSGKQVGFIRNGDAKAHAKGAAPAPSSRMHAAHSMVAAGTASARGPGE 542


>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = +2

Query: 413 SSTLLLPRASTEPTARVSTCPL-----LTRSIPTSSLQPCSSVKPL**R*LKPPXXRSSG 577
           SS L  P   T P+   S+ PL     LT S P +S  P +S  PL      P    SS 
Sbjct: 182 SSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSPL----TSPSPLTSSS 237

Query: 578 NTTASRLLTT 607
             T+S  LT+
Sbjct: 238 PLTSSSPLTS 247


>SB_22509| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 752

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 606 VVSNRDAVVFPEDRXXGGFSHLHHKGFTDEHGCNEEVGIDLVRSGQVETLAVGSVE 439
           +  NR  +V   D   GG  ++H +  T E+GC     IDL    Q    AV +++
Sbjct: 27  IEDNRGPIVLEGDVILGGLFNVHSRSTTTENGCG---SIDLNPGFQYYAAAVFAID 79


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 419 TLLLPRASTEPTARVSTCPLLTRSIPTSSLQPCSSVKP 532
           T LL   +T PT+   +    T   PTSSL P SS+ P
Sbjct: 283 TSLLEPTTTIPTSATRSSMAHTSIAPTSSLAPTSSLAP 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,385,746
Number of Sequences: 59808
Number of extensions: 440085
Number of successful extensions: 1063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)