Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0707
         (853 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four ...    34   0.75 
BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro...    33   1.7  
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.     33   1.7  

>AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four and
           a half LIM domain protein 2 protein.
          Length = 151

 Score = 33.9 bits (74), Expect = 0.75
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 380 AG*EXGSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSS 505
           AG    S+   +S+ L PR S+  T R+S CP +  ++P S+
Sbjct: 63  AGMRPASSATAASSQLEPRVSSPKTIRISVCPAMRNNMPCSA 104


>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like
           protein rA9 protein.
          Length = 1649

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -2

Query: 477 SGQVETLAVGSVEARGSKSVDEHASVDPXSHPARSPHENIEVLSVVEDSEDFDGFFHLEL 298
           +G  E  +VGS    G  S  EH           S  E++E  S  EDSED DG   LE+
Sbjct: 28  AGDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSED-DGETLLEV 86

Query: 297 VG 292
            G
Sbjct: 87  AG 88


>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
          Length = 1654

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -2

Query: 477 SGQVETLAVGSVEARGSKSVDEHASVDPXSHPARSPHENIEVLSVVEDSEDFDGFFHLEL 298
           +G  E  +VGS    G  S  EH           S  E++E  S  EDSED DG   LE+
Sbjct: 33  AGDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSED-DGETLLEV 91

Query: 297 VG 292
            G
Sbjct: 92  AG 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,332,276
Number of Sequences: 237096
Number of extensions: 2012699
Number of successful extensions: 4076
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4076
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)