Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0705
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    35   0.009
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    33   0.035
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.57 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    29   0.75 
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    29   0.75 
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    28   1.3  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.3  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   3.0  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    25   7.0  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   9.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.2  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = +2

Query: 392  LFTAVFDYVAQGEDELSLRRGEIVEVLSKD------AYISGDEGWGRGKSGTALVYSRPS 553
            L+ A++D+  +  +E+++++ EI+E++ K+      A  +G EGW      T    S P 
Sbjct: 1110 LYLALYDFAGRSPNEMTIKKDEIIEIVQKEPSGWWLALKNGAEGWVPATYVTEYKGSTPQ 1169

Query: 554  TSRKRT 571
            T+   T
Sbjct: 1170 TTASST 1175


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +2

Query: 401 AVFDYVAQGEDELSLRRGEIVEVLSKDAYISGDEGWGRGKSG 526
           A++ Y AQ + ELS++ G+I++V +++A     EG   G +G
Sbjct: 591 ALYAYTAQSDMELSIQEGDIIQVTNRNAGNGWSEGILNGVTG 632


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 638 RRRITSSSLSSEKDTRGGXTAKGSSSVTYSAGNIPTRSPIFPVPILRP 495
           ++R TSSS  SE D       K    +  ++   P R+P+ P P+ +P
Sbjct: 267 QQRGTSSSQPSENDANITALPKPEPKMYENSDLTPARTPVTPAPLEKP 314


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 511 TGKIGDRVGIFPAEYV 558
           TG+IG R GIFPA YV
Sbjct: 412 TGRIGYREGIFPANYV 427


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 401 AVFDYVAQGEDELSLRRGEIVEVLSK 478
           A++DY AQ   +LS   G+ +EV+S+
Sbjct: 414 ALYDYAAQAAGDLSFHAGDRIEVVSR 439


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 386 LALFTAVFDYVAQGEDELSLRRGEIVEVLSKDAYISGDEGWGRG 517
           L   +A++DY A   +E+S R+G+ + VL    Y   ++GW  G
Sbjct: 609 LGYVSALYDYDAAIPEEISFRKGDTIAVLK--LY---EDGWWEG 647


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 434 ELSLRRGEIVEVLSK-DAYISGDEGW-GRGKSG 526
           E+SL++G+I+ +LSK D   +  E W GR +SG
Sbjct: 241 EMSLKKGDIIAILSKTDTQGNPCEWWQGRKRSG 273


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +1

Query: 499 RRMGTGKIGDRVGIFPAEYVTEEDPLAVXPPRVSFSELKLEEV 627
           R + +    + +GI P+ Y+TE +P         +++  ++E+
Sbjct: 57  RNVNSNDDDEEIGIVPSNYITEAEPSTKMKALYDYTQQSVDEI 99


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 401 AVFDYVAQGEDELSLRRGEIVEVL 472
           A++D+ A  + ELS ++G+I+ VL
Sbjct: 222 ALYDFAATEQGELSFKKGDIILVL 245


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 86  RSDKVNYFPFIYHVIK 39
           R++ V Y  FIYHV+K
Sbjct: 320 RAEAVEYMSFIYHVLK 335


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 212 IIPPSLFLPSIMAVCSVM*IFL*HSFDKAHA 120
           + PP+L  PS+++ C++  IF  H  D   A
Sbjct: 235 VYPPTLIWPSVLSSCALFKIF--HDNDNTKA 263


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 401 AVFDYVAQGEDELSLRRGEIV 463
           A++DY AQ ++ELS    EI+
Sbjct: 807 AIYDYQAQEDNELSFFEDEII 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,783
Number of Sequences: 5004
Number of extensions: 40543
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)