Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0705
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.4  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 86  RSDKVNYFPFIYHVIK*MDEMTTPRCRI 3
           R  ++N+ PF YH++   D+      RI
Sbjct: 489 RQYRLNHKPFTYHIVVNSDKNVKGMVRI 516


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 86  RSDKVNYFPFIYHVIK*MDEMTTPRCRI 3
           R  ++N+ PF YH++   D+      RI
Sbjct: 489 RQYRLNHKPFTYHIVVNSDKNVKGMVRI 516


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 516 PRPHPSSPEMYAS 478
           P  HPS+P +YAS
Sbjct: 128 PNGHPSTPIVYAS 140


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 86  RSDKVNYFPFIYHVIK*MDEMTTPRCRI 3
           R  ++N+ PF YH++   D+      RI
Sbjct: 115 RQYRLNHKPFTYHIVVNSDKNVKGMVRI 142


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 573 RVLFRDVLGREYTNAVPDFPRPHPSSPE 490
           RVL R V G+E T   P  P     S E
Sbjct: 375 RVLMRTVRGKEKTCYYPYHPSTQEDSEE 402


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 573 RVLFRDVLGREYTNAVPDFPRPHPSSPE 490
           RVL R V G+E T   P  P     S E
Sbjct: 375 RVLMRTVRGKEKTCYYPYHPSTQEDSEE 402


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 95   RFLISNITPRVLYQTSV 145
            RF+++N+ P  +YQ  V
Sbjct: 1556 RFVVTNLQPSSVYQLKV 1572


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 95   RFLISNITPRVLYQTSV 145
            RF+++N+ P  +YQ  V
Sbjct: 1552 RFVVTNLQPSSVYQLKV 1568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,201
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)