Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0705
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30190.1 68416.m03809 hypothetical protein                          29   2.6  
At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to...    28   4.5  
At5g19340.1 68418.m02305 expressed protein                             28   4.5  
At3g05980.1 68416.m00683 expressed protein                             28   4.5  
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    28   6.0  
At5g59610.1 68418.m07469 DNAJ heat shock N-terminal domain-conta...    27   7.9  

>At3g30190.1 68416.m03809 hypothetical protein
          Length = 263

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 626 TSSSLSSEKDTRGGXTAKGSSSVTYSAGNIPTRSPIFPVPILR 498
           +SSS SS   +    ++  SSS T S+ +  + S  F VP+LR
Sbjct: 34  SSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSFSSYFVVPLLR 76


>At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to
           GP|8809669| syntaxin related protein AtVam3p
           [Arabidopsis thaliana]
          Length = 268

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 386 LALFTAVFDYVAQGEDELSLRRGEIVEVLSKDAYISGDEGWGRGKSGTALVYSRPSTSRK 565
           +A   AV +   QG  E+  + GE+ E+    A +  D+G      GT +  SR +TS+ 
Sbjct: 171 IAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQG 230

Query: 566 RT 571
           ++
Sbjct: 231 KS 232


>At5g19340.1 68418.m02305 expressed protein
          Length = 263

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 509 PILRPPKCMRLWKEL 465
           P  RPPKC  LWKEL
Sbjct: 149 PSPRPPKCTVLWKEL 163


>At3g05980.1 68416.m00683 expressed protein
          Length = 245

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -3

Query: 509 PILRPPKCMRLWKEL 465
           P  RPPKC  LWKEL
Sbjct: 132 PSPRPPKCTVLWKEL 146


>At2g07360.1 68415.m00843 SH3 domain-containing protein contains Pfam
            profile PF00018: SH3 domain
          Length = 1196

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 398  TAVFDYVAQGEDELSLRRGEIVEV 469
            TA++D+ A G+DEL+L   E +E+
Sbjct: 1140 TALYDFTAGGDDELNLTAEEELEI 1163


>At5g59610.1 68418.m07469 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9UXR9 Chaperone
           protein dnaJ (Heat shock protein 40 Methanosarcina
           thermophila, SP|Q9QYI6 DnaJ homolog subfamily B member 9
           Mus musculus; contains Pfam profile PF00226 DnaJ domain
          Length = 268

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 431 DELSLRRGEIVEVLSKDAYISGDEGWGRGKSGTALVYSRPSTSR 562
           +ELS    E VE L K+  IS ++  G  K+G    +   ST +
Sbjct: 191 EELSEIGEEFVEFLEKELNISDEDNEGSSKNGERFDFEEGSTEK 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,553
Number of Sequences: 28952
Number of extensions: 224519
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)