Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0702
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.6  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    27   2.1  
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.8  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    27   3.7  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    26   4.9  
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    26   4.9  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   4.9  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   6.5  
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.5  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 689 PIRPQTQIEQVHSPISFPVDVIVSGN 612
           P++ Q Q  Q+HS I  PV  IVS N
Sbjct: 195 PLQQQQQQRQLHSGIQQPVSTIVSQN 220


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 504 SLATLLISSAVSCWANDYWVVMSAYLIASLSLAWVTVA-AHNYIHRKTNW 650
           +++TL  S  +  +   YW+ ++ YL  ++S  WV    +  Y+ +++NW
Sbjct: 122 TISTLARSEGLKGFYRGYWMGVAIYLPTTVSW-WVCYEESKKYLQKQSNW 170


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 564 VMSAYLIASLSLAWVTVAAHNYIHRKTNWRMYLFNLSL 677
           + +A  + S+ L  + VA   Y +RK  W++Y+  + +
Sbjct: 200 IKAAIAVPSVILGLILVALVYYAYRKDTWKIYMAKIRI 237


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 97  MSFLFCCSSMSYFNIFNIFRRHINKIRAFT 8
           MS  +   S S+ +  N+F +H+N ++ F+
Sbjct: 564 MSCAYSLGSRSFSHALNVFEKHLNTLKHFS 593


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 325 NSSVNKVLEKYYVREAKTPRNSPFTFEDDGFYRTLKRAVVEELKKVPKHIPS 480
           NS  N + +KYY+RE    +   + F+    +R    A  E   K  K + S
Sbjct: 152 NSLGNCMYDKYYLREVGKMKPPTYHFDSGDLFRKTDPAARESFIKKQKTLNS 203


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
 Frame = +2

Query: 26  INMAPKNVEYIEIAHRRAAEKKTHVS--FPQLKYPSLRDEGLR-DPVQWLIGKSMDDGA- 193
           I+ A  NVE+ E   RR    K +V+  F QL +  L   G     V+  I  + ++ A 
Sbjct: 22  ISPASSNVEHSEKQPRRDFRVKKYVAPGFSQLNWSKLVASGQNLSGVEKPIPVTKEELAK 81

Query: 194 ----EGLWRVHNG-IYNFNDFLEKHPVGR 265
               E  W    G +YN + +L  HP G+
Sbjct: 82  HKTKEDCWIAIRGKVYNVSAYLPYHPAGQ 110


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 612 VAAHNYIHRKTNW-RMYLFNLSLWSYRDFRVSHALSHHLYPNT 737
           V+   Y+HR  NW ++Y    + +            +HL PNT
Sbjct: 228 VSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKKETAKYHLPPNT 270


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 598  KLNEAIKYADITTQ*SLAQHETAEDISKVAR 506
            + N+ +KYAD+TTQ +    + A D+   +R
Sbjct: 1016 RYNDIVKYADLTTQDAHVIKKIAADLVTASR 1046


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 168 SGNPWTTEQKAY 203
           SG PW TE+KAY
Sbjct: 11  SGKPWKTEKKAY 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,282
Number of Sequences: 5004
Number of extensions: 64313
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)