Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0702
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40386| Best HMM Match : BAR (HMM E-Value=0) 33 0.24
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) 33 0.32
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 30 1.7
SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_42860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_55712| Best HMM Match : RnaseH (HMM E-Value=0.021) 29 4.0
SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1) 28 9.1
SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39) 28 9.1
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_55505| Best HMM Match : Trypsin (HMM E-Value=0) 28 9.1
>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
Length = 369
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 29 NMAPKNVEYIEIAHRRAAEKKTHVSFPQLKYPSLRDEGLRDPVQWLIGKSMDDGAEG 199
N+ PK EY++ A+ K H++ P KYP EGL V L G+ + +G
Sbjct: 51 NLTPKTKEYLQPNATYNAKVKMHMTQPDEKYP--YTEGLMGDVMMLAGQEIGQVGKG 105
>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
Length = 303
Score = 32.7 bits (71), Expect = 0.32
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 185 DGAEGLWRVH-NGIYNFNDFLEKHPVGR 265
D G+W + +G+Y+ DF+E+HP G+
Sbjct: 168 DARHGVWTTYEDGVYDLTDFIEQHPGGK 195
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 334 VNKVLEKYYVREAKTPRNSPFTFEDDGFYRTLKRAVVEELKKVPK 468
++KV K KTPR SP DDG R R +++ + P+
Sbjct: 1120 LSKVSRKVRKASLKTPRPSPGKLRDDGITRPASRVSAQQISRKPR 1164
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 296 ISVPLESSNHSAPPDAS 246
IS PL+ NH+APPDAS
Sbjct: 855 ISSPLQCQNHTAPPDAS 871
>SB_50161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 612 VAAHNYIHRKTNWRMYLFN--LSLWSYRDFRVSH 707
+A H Y+ + FN LS W YRDF SH
Sbjct: 1 MANHRYVDEPQAYHNSSFNKELSCWEYRDFAFSH 34
>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 182 DDGAEGLWRVHNGIYNFNDFLEKHPVGRSG 271
DDG + R H G+Y+ D L ++P+GR+G
Sbjct: 482 DDGVDR--RSHMGVYDLFDGLPRNPMGRTG 509
>SB_42860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 50 EYIEIAHRRAAEKKTHVSFPQLKYPSLRDEG 142
E IA R AEK++H +F +K+PS+ + G
Sbjct: 118 ERSSIAKRTMAEKESHSTFRIIKFPSVPEAG 148
>SB_55712| Best HMM Match : RnaseH (HMM E-Value=0.021)
Length = 401
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 460 VPKHIPSYADMIIDGLSRLCLYLQRFHVGPTI 555
VP+HIP + + D LSRL + R PT+
Sbjct: 351 VPQHIPGVRNSLADSLSRLQIQRFRLMAPPTV 382
>SB_32006| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
Length = 497
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 277 LSKGTDITEAFESHHLNSSVNKVLEKY 357
+S G D+T E H LN + + L+KY
Sbjct: 248 VSHGVDVTNLPEDHRLNVIIREYLDKY 274
>SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)
Length = 378
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 207 RHKPSAPS-SMDFPINHCTGSLNPSSLSEGYLS 112
++KPS S S D +N TGSL + +S+GY S
Sbjct: 203 KYKPSILSKSPDQTVNETTGSLKLTCISDGYPS 235
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 430 KRAVVEELKKVPKHIPSYADMIIDGLSRLCLYLQRFHVGPTIIG 561
K ++E + PKH+P+Y M + LS++ +Y ++ I G
Sbjct: 2163 KGLILEVDLEYPKHLPAYIGMCMLDLSKVLMYDSHYNYIKEIYG 2206
>SB_55505| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 292
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 495 HRWSLATLLISSAVSCWAN---DYWVVMSAYLIASLSLAWVTVAAHNYIHRKTN 647
H W +A +++ SA +C + + W+V +A+ S L W VA ++ + N
Sbjct: 52 HPWMVA-MMLDSAQACGGSLVPEDWIVTAAHCFDSNRLRWRVVAGNDMPSKAVN 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,493,701
Number of Sequences: 59808
Number of extensions: 484060
Number of successful extensions: 1303
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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