Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0701
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787     35   0.041
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667...    32   0.22 
05_05_0049 - 21895172-21895181,21895297-21896717                       28   3.5  
08_02_1583 + 28036125-28037030,28037411-28037656                       28   4.7  
01_06_1378 + 36788283-36789734                                         28   4.7  

>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
          Length = 345

 Score = 34.7 bits (76), Expect = 0.041
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +1

Query: 121 RKYVVXXHFKGVPKREDYELVEFVX------PPLIDGEVLVKAEWISVDPY 255
           +K V+  H  G PK  D ELV          P   DG VLVK  ++S DPY
Sbjct: 6   KKIVLRNHVTGFPKESDMELVAATGAAPSRVPEGTDGAVLVKNLYLSCDPY 56


>06_03_0679 -
           23464009-23464381,23464804-23464886,23466537-23466703,
           23466821-23467007,23467093-23467311
          Length = 342

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 118 ARKYVVXXHFKGVPKREDYEL-VEFVXPPLIDGEVLVKAEWISVDPY 255
           +R   V  H +G+P  +D+E+    V      GEVLV+  ++SVDPY
Sbjct: 5   SRYVAVRHHVEGLPSEDDFEVKAARVRWWPESGEVLVRNLYLSVDPY 51



 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 300 SYQVGVVVXSRXSNYPVGXRVVAHKGWCDHYVFTPS 407
           +Y  G VV S    Y  G  V    GW D+ +F PS
Sbjct: 77  AYGAGEVVASACEEYKEGDVVAGVLGWEDYTLFRPS 112


>05_05_0049 - 21895172-21895181,21895297-21896717
          Length = 476

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 312 PLDN*XGRRVQLGKSCKPLIRVDADPFGFNEDLAVDQRRXNKFD 181
           PL N  G  + +G S +     D + FG+   +AV   R NKFD
Sbjct: 395 PLGNPDGAALTMGSSPR-FPMYDGNDFGWGRAIAVRSGRANKFD 437


>08_02_1583 + 28036125-28037030,28037411-28037656
          Length = 383

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 151 GVPKREDYELVEFVXPPLIDG-EVLVKAEWISVDPY*G 261
           G+P   DY  +  V    + G +V+   EW++VDP  G
Sbjct: 254 GMPPHSDYGFLTLVLQDEVAGLQVMHAGEWLTVDPLPG 291


>01_06_1378 + 36788283-36789734
          Length = 483

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 312 PLDN*XGRRVQLGKSCKPLIRVDADPFGFNEDLAVDQRRXNKFD 181
           PL N  G  + +G S +     + + FG+   LAV   R NKFD
Sbjct: 401 PLGNPDGAVITMGSSNR-FPMYEGNDFGWGRPLAVRSGRANKFD 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,071,413
Number of Sequences: 37544
Number of extensions: 142198
Number of successful extensions: 230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)