Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0701
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.073
SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)                   29   2.1  

>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 33.9 bits (74), Expect = 0.073
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 157 PKREDYELVEFVXPPLI--DGEVLVKAEWISVDPY 255
           P  E++  VE V PPL+   GE+LVK  ++SVDPY
Sbjct: 21  PSLENFA-VEPVEPPLVCEQGEILVKTLYLSVDPY 54


>SB_32117| Best HMM Match : DUF1143 (HMM E-Value=7.7)
          Length = 755

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 58  LSGSACDKKTQGTTKVEMTSARKYVVXXHFKGVP 159
           L G   D   +G+ K    S+R + +  +FKG+P
Sbjct: 693 LEGKEADSDDEGSLKDNRRSSRSFSIKNYFKGIP 726


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,786,421
Number of Sequences: 59808
Number of extensions: 177922
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)