Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0701
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    27   9.8  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    27   9.8  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    27   9.8  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    27   9.8  

>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1237

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 49  TQSLSGSACDKKTQGTTKVEMTSARKYVVXXHFKGVPKREDYE 177
           T   + + C  KT   T   MT  + +V   H+K  PK E  +
Sbjct: 422 TMGNATAICSDKTGTLTTNRMTVVQSFVNDVHYKDTPKIESLD 464


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform b protein.
          Length = 1234

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 49  TQSLSGSACDKKTQGTTKVEMTSARKYVVXXHFKGVPKREDYE 177
           T   + + C  KT   T   MT  + +V   H+K  PK E  +
Sbjct: 422 TMGNATAICSDKTGTLTTNRMTVVQSFVNDVHYKDTPKIESLD 464


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform a protein.
          Length = 1160

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 49  TQSLSGSACDKKTQGTTKVEMTSARKYVVXXHFKGVPKREDYE 177
           T   + + C  KT   T   MT  + +V   H+K  PK E  +
Sbjct: 422 TMGNATAICSDKTGTLTTNRMTVVQSFVNDVHYKDTPKIESLD 464


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane
           calcium atpase protein3, isoform c protein.
          Length = 1137

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 49  TQSLSGSACDKKTQGTTKVEMTSARKYVVXXHFKGVPKREDYE 177
           T   + + C  KT   T   MT  + +V   H+K  PK E  +
Sbjct: 422 TMGNATAICSDKTGTLTTNRMTVVQSFVNDVHYKDTPKIESLD 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,754,485
Number of Sequences: 27780
Number of extensions: 124593
Number of successful extensions: 223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)