Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0700
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    33   0.027
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.5  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    26   5.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   7.3  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   7.3  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.6  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 88  ADLPRHRLVQDQRIHXRLPVHCPNERDRISGARSAELRVHIRDIREGSL 234
           A L  H ++    +  R   HCP E  + S  RS+ L+ HI  I EG++
Sbjct: 217 AHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNM 265


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +3

Query: 432 IRQIRDMFVYNFFDI*PXTILPXXTKGLMTXQYCER*NSSELKXNTFXIFIP 587
           ++  R M +YN FDI      P    GL T   C       +K     + IP
Sbjct: 691 VQHSRQMLLYNLFDIAQSRKAPILIIGLTTRYDCSESLEKRVKSRFSHMVIP 742


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 1   GENARFHCAINRVFAIGLQRPKPRPKSRPADLPRH 105
           G  A F+   +R    GLQ P+PR +S    LP H
Sbjct: 250 GYYAEFNVMYDRGTWFGLQAPEPRVESILMTLPLH 284


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 230 DPSRISRICTRSSADRAPDILSRSFGQ*T 144
           D S+IS I  +++     DILSRS G  T
Sbjct: 394 DQSKISEIAVKTAMASTADILSRSKGSAT 422


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 91  DLPRHRLVQDQRIHXRLPVHCPNERDRISG 180
           D   HR++   R++ ++  H P++  RISG
Sbjct: 266 DRESHRVITHPRVYPKIFPHSPSDLLRISG 295


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 86  QLTYRDIVLYKINEYTYG 139
           QL Y D++LY IN Y  G
Sbjct: 426 QLHYHDLILYVINTYYSG 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,910
Number of Sequences: 5004
Number of extensions: 39504
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)