Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0700
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781...    32   0.35 
07_01_0013 - 99952-100413,100534-100704                                29   2.5  
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620...    28   5.7  
07_01_0864 - 7185070-7185141,7185274-7185402,7185585-7185695,718...    28   7.5  

>06_01_1005 -
           7810210-7810907,7811005-7811080,7811180-7811368,
           7811507-7811728,7811906-7812004,7812112-7812192,
           7812384-7812679,7812777-7813116,7813221-7813284,
           7813511-7813735,7816958-7817244
          Length = 858

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 163 RDRISGARSAELRVHIRDIREGSLHRRQRRI-PIVKSGGVGQKFV 294
           RDRI  +R + L +   D+R G    R+RR+ P+    G+ Q FV
Sbjct: 46  RDRIGSSRGSRLALFGSDLRLGRFRPRRRRVAPVDGDDGIFQDFV 90


>07_01_0013 - 99952-100413,100534-100704
          Length = 210

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +1

Query: 61  PKPRPKSRP-ADLPRHR--LVQDQRIHXRLPVHC-PNERDRISGARSAELRVHIRDIREG 228
           P  RP S   A LP+    L+   R H R P+H  P+    +     A+  V   D+  G
Sbjct: 117 PPCRPCSATHAGLPQSSSPLMPASRCHCRHPLHLSPSVPSHVGYLTLAKSVVETSDLATG 176

Query: 229 SLHRRQRRIPIVKSGGVGQ 285
           +LH+    +     GGVG+
Sbjct: 177 TLHQATAALDQQPHGGVGR 195


>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
            42262148-42262282,42262352-42262562,42262886-42263034,
            42263169-42263267,42263821-42263989,42264176-42264308,
            42264600-42264694,42264774-42264882,42265136-42265295,
            42265433-42265594,42265814-42265985,42266254-42266402,
            42266914-42266951,42267779-42267839,42267913-42268155,
            42268233-42268315,42269521-42269609,42270449-42270495,
            42270576-42270656,42270737-42270899,42271077-42271267,
            42271691-42271762
          Length = 1097

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +1

Query: 55   QRPKPRPKSRPADLPRHRLVQDQRIHXRLPVHCPNERDRISGARSAELRVHIRDIREGSL 234
            QR +P P+ +PA  PR R   ++RI        P+ R R   +     R     +R G  
Sbjct: 1007 QRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPSPRRR-PDSPPIRRRADASPVRRGDT 1065

Query: 235  HRRQR 249
              R+R
Sbjct: 1066 PPRRR 1070


>07_01_0864 -
           7185070-7185141,7185274-7185402,7185585-7185695,
           7186114-7186292,7186479-7186576,7186691-7186956,
           7187895-7188050,7188131-7188319,7188711-7188824,
           7189131-7189273,7189683-7189818,7189954-7190058
          Length = 565

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 235 HRRQRRIPIVKSGGVGQ-KFVKLKLKSQRGHGFNFTVTIYGKY 360
           HRR R +P+V  GG G    V  ++++ R  G    + ++ +Y
Sbjct: 27  HRRLRLLPLVAGGGGGSPPRVGRRIRASREKGRRVGIRVFARY 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,864,764
Number of Sequences: 37544
Number of extensions: 264445
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)