Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0693
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    26   0.32 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.75 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.0  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   5.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   6.9  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.2  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 390 PGPNAYDPHLMDGTPKYTMGGRGPSGKPSENPGPNAYDP 506
           P P  Y  H     P Y   G  P+G P +NPG N   P
Sbjct: 164 PPPPVYTHHYARYHP-YPNFGVPPAGIPLQNPGLNLNPP 201


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 175 RGHDSXPSDTPGPNAYDPHL--PDNTHKLLFLVEVT 276
           R H   P D   PN Y+ HL  P+  H +  + E++
Sbjct: 497 RFHIYTPEDLFAPNTYNRHLVAPNGDHVISLIDEIS 532



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +1

Query: 64  KFTIAGRGHDSKPSDTPGPNAYDPHL--PDNTH 156
           K  +  R H   P D   PN Y+ HL  P+  H
Sbjct: 491 KIFLPFRFHIYTPEDLFAPNTYNRHLVAPNGDH 523



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 360 RGHDSKPSDTPGPNAYDPHLM 422
           R H   P D   PN Y+ HL+
Sbjct: 497 RFHIYTPEDLFAPNTYNRHLV 517


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 393 GPN-AYDPHLMDGTPKYTMGGRGPSGKPSENPGPNAYDPHY 512
           GP+ AY P   DGT  Y M G+    +P  +P  +    HY
Sbjct: 410 GPSGAYSP---DGTMGYMMDGQQMMHRPPGDPAFHNQYAHY 447


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +3

Query: 387  TPGPNAYDPHLMD--GTPKYTMGGRGPSG 467
            +P  N+  P   D  GTP+ T G R P G
Sbjct: 929  SPCRNSASPASSDRSGTPRSTNGDRKPGG 957


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 330 DNTPTFTFSGRGHDSKPSDTPGPNAYDPHLMD 425
           DN P+   +    +  P +    ++ DPHL D
Sbjct: 1   DNLPSSASNPAVSERDPDEDNSEDSKDPHLTD 32


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 441 TMGGRGPSGKPSEN 482
           T+G R P G  SEN
Sbjct: 12  TLGARSPGGDHSEN 25


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 518 YLVMRIIGIWP 486
           Y +MRI+GI+P
Sbjct: 68  YALMRIVGIFP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,194
Number of Sequences: 336
Number of extensions: 4731
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)