Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0693
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 150 IVWKMRIVGIRAWSVRWLTVVTSTSNSK 67
           I  K RI+G R+W  R   +  ++S+ K
Sbjct: 343 ICCKTRIIGRRSWVTRESQICNNSSSDK 370



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 288 TVYYRDLYQK**FMCIVWKMRIVGIRAWSVRWLTVVTSTTKSK 160
           ++ YR+ +++     I  K RI+G R+W  R   +  +++  K
Sbjct: 332 SIKYRNAFKQ----TICCKTRIIGRRSWVTRESQICNNSSSDK 370


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/39 (28%), Positives = 13/39 (33%)
 Frame = +3

Query: 378 PSDTPGPNAYDPHLMDGTPKYTMGGRGPSGKPSENPGPN 494
           P   P P+        G+P     G  P G P   P  N
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,722
Number of Sequences: 438
Number of extensions: 5087
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)