Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0692
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.14
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 31 0.18
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 28 1.7
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 2.2
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 27 3.0
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 27 3.0
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo... 27 3.9
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 3.9
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 27 3.9
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 5.2
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 5.2
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 26 6.9
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 9.1
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 25 9.1
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 25 9.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 257 DEQQTDTENKEKIENEDQEMKDVSE-KADSKPVDD-EKVILDFKED 388
D+Q T +++K +E D++M+D S+ + D+K DD E LD ED
Sbjct: 1282 DKQDTASKDKNSLETIDEKMEDASKIEGDAKTGDDNEMEDLDKMED 1327
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 31.1 bits (67), Expect = 0.18
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 257 DEQQTDTENKEKIENEDQEMKDVSEK-ADSKPVDDEKVILDFKEDDD 394
DE+ E ++K+E + + DV K DS VDD++ D KE D
Sbjct: 472 DEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETAD 518
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 260 EQQTDTENKEKIENEDQEMKDVSEKADSKPVDDEKVILDFKEDDDLSYVTQD 415
E E + E ED+ + S++AD K + + + +D KE+ S T D
Sbjct: 467 EANDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETAD 518
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 257 DEQQTDTENKEKIENEDQEMKDVSEKADSKPVDDEKVILDFKEDDDL 397
+EQ ++ + + E D ++ +KP+ EK + FK+DD++
Sbjct: 16 EEQLSNLTSDSQANKRVYEDYDFKDETSAKPIPTEKKLKVFKKDDNV 62
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +2
Query: 254 TDEQQTDTENKEKIENEDQEMKDVSEKADSKPVDDEKVILDFKEDD 391
T +++ +++ E E E ++V + + S P++++ V DF+ D
Sbjct: 121 TPKREIARRQRDEDEWESDEYEEVVDGSASHPIEEDSVSTDFQNHD 166
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 624 ILSGLRSRWFVSSLLRKHLQEENVMSPGSQVHISSFLR 511
++S LR ++F S HL +N +V++ SFLR
Sbjct: 461 MVSYLREKYFTPSRWISHLNFQNYRQENQRVNMRSFLR 498
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 260 EQQTDTENKEKIENEDQEMKDVSEKADSKPVDDEKVI 370
E T KEK D+ MKDV EK + +E+ I
Sbjct: 145 EDDQHTAMKEKDNESDKTMKDVEEKTEPSLKKEEEDI 181
>SPCC24B10.13 |skb5||Shk1 kinase binding protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 656 DHLVTGRDARHPSDHE 703
D+LV GRD +P DHE
Sbjct: 8 DYLVVGRDYLYPPDHE 23
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 263 QQTDTENKEKIENE--DQEMKDVSEKADSKP-VDDEKVILDFKEDD-DLSYVTQDMFPSY 430
++T+ + + ENE + E S ++ P ++ K D +EDD D ++T
Sbjct: 141 KETENSDPKSAENEVLEGETTQHSNNKEAHPNTEENKEQEDNEEDDEDDGWITPSNIRKK 200
Query: 431 STERGVGQSFL 463
E GVG+S +
Sbjct: 201 KAEDGVGESLV 211
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 257 DEQQTDTENKEKIENEDQEMKDVSEKADSKPVDDEKVILDFK--EDDDL 397
DE+ D+E++E + K+ E+ D + D E DF E DDL
Sbjct: 374 DEELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADFSDGEADDL 422
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 260 EQQTDTE---NKEKIENEDQEMK--DVSEKADSKPVDDEKVILDFKEDDDL 397
E+Q+D E N++ +NE+ E K V E AD+K D+E + D+ +
Sbjct: 703 EEQSDWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMNDEQM 753
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 257 DEQQTDTENKEKIENEDQEMKDVSEKADSKPVDDEKVILDFKEDDD 394
DE+ + E+ +++ +E + K DD+ V ++ EDDD
Sbjct: 96 DEESSQQEDSSS-KSDSEEESSMEPKTTEYDEDDKHVTVEIVEDDD 140
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 254 TDEQQTDTENKEKIENEDQEMKDVSEKAD 340
T E D + IE +QEMKDVSE D
Sbjct: 81 TLETYIDQGATDLIEQVEQEMKDVSELPD 109
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 475 LHTMQAVQXTPHSQETADVHLRTWRHH 555
LH +A + +E + HL+ W HH
Sbjct: 543 LHIEKAAELLDQPKEIVERHLKFWLHH 569
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 615 GLRSRWFVSSLLRKHLQEENVMSPGSQVHI 526
G RW + SL +H+ ENV P S ++
Sbjct: 56 GTERRWNLQSLPWQHVTVENVQHPASSPNL 85
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 243 HHASLLEHHPCVVYADDAHTGMTAPCPKLKSST 145
H +SLL+HH + + H P P L T
Sbjct: 546 HTSSLLDHHSPLATSSSEHEMEATPSPALLKKT 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,475
Number of Sequences: 5004
Number of extensions: 48952
Number of successful extensions: 220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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