Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0690
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.52 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.52 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 57  TMDAIKKKMQAMKLEKDNAMDKADTCEQQARDANLRAEKVNEEVRELQKKLAQ-VEEDLI 233
           TMD   K  +  +++K + MD+ D   +  R  N    ++NE +  L  KL + +  D  
Sbjct: 503 TMDRTDKMSRIDRMDKIDRMDRMDRTNRMDR-MNRMNRQMNEYMMALSMKLQKFINNDYN 561

Query: 234 LNK 242
            N+
Sbjct: 562 FNE 564



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/42 (21%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 57  TMDAIKKKMQAMKLEKDNAMDKADTCEQQARDANL-RAEKVN 179
           TMD + +  +  ++++ + MD+ DT ++  + + + R +K++
Sbjct: 479 TMDTMDRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKID 520


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 149  RRQPPC*EGKRGSPRTPEEA--RPGGGRPDPEQEQTGEANKDLEEKEKQLTATEAEVAAL 322
            ++Q P  + ++   + P++   +P   +P P+Q+Q  +  +  ++++K+  A    V  L
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQL 1560

Query: 323  NR 328
             R
Sbjct: 1561 QR 1562


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +2

Query: 215  GGGRPDPEQEQTGEANKDLEEKEKQLTATEAEVAALNRKVQQI 343
            G  + D   +QTG     L+++   L      +A  NRK+  +
Sbjct: 1614 GSDKDDVVYQQTGVGGATLDKRRPDLRDELGYIAPPNRKLPPV 1656


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 657 TFNSSSSSEILASPDXTRFFGDFEFVFNERPVFAKP 550
           T N    SEI      T    D  F +NER +F  P
Sbjct: 567 TMNDLEPSEIFYEKIETSLNSDKPFTYNER-IFGFP 601


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -1

Query: 657 TFNSSSSSEILASPDXTRFFGDFEFVFNERPVFAKP 550
           T N    SEI      T    D  F +NER +F  P
Sbjct: 567 TMNDLEPSEIFYEKIETSLNSDKPFTYNER-IFGFP 601


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -1

Query: 432 RLFSSA-DCWASSSFCWAV 379
           R F+SA D W+    CW V
Sbjct: 813 RKFTSASDVWSMGIVCWEV 831


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,786
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)