Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0689
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    28   1.2  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   6.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   6.2  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   8.2  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 496 IGITSVGMVSXKKTYHTKDVIVRPKSEIEIHGY 594
           I   ++G++S  K +HT D+I+  ++    H Y
Sbjct: 398 ISAGNIGVISGIKQFHTGDIIINKENSKNFHEY 430


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 650 DTIVAITISTVFLVLAAKQYPCISISLFGLTIT 552
           DT+  ++ ++ F+V   +QYPC     +G   T
Sbjct: 53  DTVCDVSSNSTFVVKCNRQYPCTRCLKYGEACT 85


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 534  DISYKGCDCETKERDRDTRILLSCQDQKYSRNSYRNNSIAE 656
            +I+     CE   +D +TR+ L  ++ K+  N   ++  AE
Sbjct: 994  EIASSSLRCENITKDSETRVALLLEENKHLNNELSSHRNAE 1034


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 597 LSCQDQKYSRNSYRNNSIAEILNMN 671
           LS  +   S N+YR N++ E+ N N
Sbjct: 442 LSYHETSVSHNTYRQNNLEELKNQN 466


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 669 SCLKFLRYYCCDNYFY 622
           S L ++ +YC DNY+Y
Sbjct: 375 SFLFYITFYCWDNYYY 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,542
Number of Sequences: 5004
Number of extensions: 46324
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)