Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0689
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0890 + 7014131-7014168,7014443-7014532,7015468-7015698,701...    31   1.2  
05_06_0012 + 24844413-24844913                                         28   6.5  

>01_01_0890 +
           7014131-7014168,7014443-7014532,7015468-7015698,
           7015931-7015944,7016569-7016925,7017033-7017379
          Length = 358

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
 Frame = -3

Query: 478 DNGIKQV*LKKNNTKQPKKLYNNYRLI-----RRKTHEVKG--TIRCAQCKSSKWVI*PV 320
           +N I +  +KK+  +  K +  N  L+     RR  +E+K     R  +CK+++W++ P 
Sbjct: 93  ENSILEKYIKKHGERNWKLVQKNTGLLSFCITRRTDNEIKNYWNTRIKKCKNNRWLLYPA 152

Query: 319 MVC 311
            VC
Sbjct: 153 NVC 155


>05_06_0012 + 24844413-24844913
          Length = 166

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 318 ITGQMTHFELLHCAHLIVPLTS*-VFLRINL*LLYNFFGCFVLFFFSYTCFIPLSTCYG 491
           + G  TH   L C +L++   S  +FL ++L LL +  G  ++F  + T  +  + C G
Sbjct: 1   MAGVHTHRAFLLCNYLLLGAASGCIFLTLSLRLLPSPCGLLLVFLHALTAVLAAAACSG 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,662,129
Number of Sequences: 37544
Number of extensions: 259839
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)