Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0689
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)                  29   5.0  
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)           28   6.6  
SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)                  28   6.6  
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    28   8.8  

>SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)
          Length = 1032

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 540 SYKGCDCETKERDRDTRILLSCQDQKYSRNSYRNNSIAEI 659
           ++K  + +TK     +R+LLSC+  + S +S RN+ +  I
Sbjct: 594 AFKSDNTKTKSMKMQSRMLLSCKTNEGSFDSMRNDEVGFI 633


>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
          Length = 945

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 438 VLFFFSYTCFIPLSTC 485
           ++ F SYTCFIP + C
Sbjct: 202 IVIFVSYTCFIPAAVC 217


>SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)
          Length = 292

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 438 VLFFFSYTCFIPLSTC 485
           ++ F SYTCFIP + C
Sbjct: 202 IVIFVSYTCFIPAAVC 217


>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 487 MVEIGITSVGMVSXKKTYHTKDVIVRPKS-EIEIHGYCLAARTKNTVEIVIATIVSQKF 660
           + E   TS+G+ +   +++ K +IV+P+  E++ H      +    V I   T ++  +
Sbjct: 298 LAESFFTSIGLKALPMSFYEKSMIVKPEGREVQCHASAWDFKINRDVRIKQCTTITHNY 356


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 570  ERDRDTRILLSCQDQKYSRNSYRNNSIAEILNMNYPPKA 686
            E+ ++  I  + +D  YS+ S     I  ++N+N PP A
Sbjct: 955  EKAQNHNITFNIRDTPYSQISVNQTFIIAVINVNEPPSA 993


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,799,646
Number of Sequences: 59808
Number of extensions: 324919
Number of successful extensions: 976
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)