Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0689
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60140.1 68418.m07539 transcriptional factor B3 family protei...    29   3.1  
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR...    28   5.4  
At4g35470.1 68417.m05041 leucine-rich repeat family protein simi...    28   7.2  
At4g28340.1 68417.m04057 hypothetical protein                          28   7.2  

>At5g60140.1 68418.m07539 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 328

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 531 KDISYKGCDCETKERDRDTRILLSCQDQKYSRNSY--RNNSIAE 656
           KDI   G DCE + +  D  I+L+  D   S N Y   ++++AE
Sbjct: 123 KDIIKVGSDCEEESQASDDVIVLNSDDSDDSDNDYSVEDDNVAE 166


>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1188

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 534 DISYKGCDCETKERDRDTRILLSCQD 611
           DI +KG D   KER R  R+LL   D
Sbjct: 272 DIEFKGLDHAVKERFRSKRVLLVVDD 297


>At4g35470.1 68417.m05041 leucine-rich repeat family protein similar
           to Leucine-rich repeat protein SHOC-2 (Ras-binding
           protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704;
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 549

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 172 ISAGPAIDVLQKAKGLVDSSESKEDE 249
           + A P ID ++ AKGL+D+ E KED+
Sbjct: 27  LPARPGIDEVEAAKGLIDNVE-KEDQ 51


>At4g28340.1 68417.m04057 hypothetical protein 
          Length = 159

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 412 YYTIFLVVLYCFFLVILALFRYLPAMVEIGITSVGMVSXKKTYHTKDVIVRPKSEIEIHG 591
           Y ++ L  ++    +  ALF  +PA+V I I+ V  ++       K VI   K   EI G
Sbjct: 66  YASVLLGAVFGVLSMAAALFIAVPAIVVIWISVVVTIAFPVKSRKKVVIEGRKVTKEIAG 125

Query: 592 YCLAARTK--NTVEIVIATI 645
           Y      K  N V ++ A I
Sbjct: 126 YVFKVLLKEGNFVALLCAVI 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,136,819
Number of Sequences: 28952
Number of extensions: 227101
Number of successful extensions: 531
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)