Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0688
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 107 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 2e-09
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 56 3e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 6e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 46 5e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.002
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 31 0.20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 30 0.26
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 28 1.1
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 28 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.4
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 4.2
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 26 5.6
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 5.6
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 107 bits (256), Expect = 2e-24
Identities = 47/54 (87%), Positives = 50/54 (92%)
Frame = -3
Query: 520 PIDNKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 359
P K+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 322 PSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 91.1 bits (216), Expect = 1e-19
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = -1
Query: 666 GIXEXTYNSXMKCDVDIRRDLYANTVLSGGTPMYPGIADRMQXEITVLAPSTIRLR 499
GI E TYNS MKCDVDIR+DLY N V+SGGT MYPGIADRMQ EI LAPS+++++
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVK 328
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 3/44 (6%)
Frame = -3
Query: 484 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 362
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = -1
Query: 666 GIXEXTYNSXMKCDVDIRRDLYANTVLSGGTPMYPGIADRMQXEITVLAPST 511
GI + N +CDVDIR L N ++ GGT + G + R+Q E++ L P +
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS 377
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/51 (47%), Positives = 40/51 (78%)
Frame = -3
Query: 511 NKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 359
N++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 330 NQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 666 GIXEXTYNSXMKCDVDIRRDLYANTVLSGGTPMYPGIADRMQXEITVLA 520
G+ + S + D+D+R LY+N VLSGG+ + G +R E+ ++
Sbjct: 278 GLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAIS 326
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 6e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -3
Query: 472 SVWIGGSILASLSTFQQMWISKQEYDESG 386
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 49.2 bits (112), Expect = 5e-07
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -1
Query: 666 GIXEXTYNSXMKCDVDIRRDLYANTVLSGGTPMYPGIADRMQXEITVLA 520
G+ E Y S + CD ++R L N V++GGT + PG+++R+Q E+ LA
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLA 371
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 46.0 bits (104), Expect = 5e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -1
Query: 666 GIXEXTYNSXMKCDVDIRRDLYANTVLSGGTPMYPGIADRMQXEITVL 523
G+ E +++ DVDIR+ LY VLSGG+ MY G+ R++ EI L
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQL 320
Score = 41.9 bits (94), Expect = 8e-05
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 508 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 386
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 663 IXEXTYNSXMKCDVDIRRDLYANTVLSGGTPMYPGIADRMQXEITVLAPSTIRLRSLL 490
+ E N +D+R+ LY N VLSGG+ ++ +R+Q ++ + I +L
Sbjct: 307 LPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEML 364
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 505 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 368
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 666 GIXEXTYNSXMKCDVDIRRDLYANTVLSGGTPMYPGIADRMQXEITVLAPS 514
GI E S +I+ L N V GG +PG R+ E+ LAP+
Sbjct: 299 GIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPA 349
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = -1
Query: 666 GIXEXTYNSXMKCDVDIRRDLYANTVLSGGTPMYPGIADRMQXEITVLAP 517
GI E + + ++ ++ L +N +++GG PG+ R++ E+T + P
Sbjct: 614 GILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMP 663
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = -3
Query: 529 SSRPIDNKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 374
S P+ + I + W G S + F+ ++++EY E GP +
Sbjct: 660 SIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -3
Query: 532 HSSRPIDNKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 365
HS R I +I PP + ++ W G I + ++WI ++ G ++ K
Sbjct: 554 HSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 479 PLW-RSNDLNLIVDGARTVISXCIRSAIPGYMGV 577
P W +S+++ LIVD R I CI +PG V
Sbjct: 551 PNWYQSSNMKLIVDTFRDYIVDCIEHMVPGLFDV 584
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 504 LRSLLLQRGSTPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 379
+++ L + TP + PPS+PS+R R S ++ APP
Sbjct: 213 VKAYLNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 466 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 365
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = -1
Query: 624 VDIRRDLYANTVLSGGTPMYPGIADRMQXEITVLAPSTIRLRSLLLQRGSTPYGSVDRSS 445
++++ D +V+ GTPM+P +Q + V APS R++ ++P S + S
Sbjct: 184 IEVQLDSSNTSVVRVGTPMHPLPQQGVQSTLPV-APSNEDQRTM---ESTSPTDSQPQPS 239
Query: 444 PPSLPSN 424
P+L S+
Sbjct: 240 APNLVSS 246
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 624 VDIRRDLYANTVLSGGTPMYPGIADRMQXEIT 529
+DIRR + V +G P PG R Q E+T
Sbjct: 282 IDIRRIMSKLIVFNGILPSLPGWYQRFQNEMT 313
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +2
Query: 407 FRDPHLLEGREGGEDRSTDPYGVLPLWRSNDLNLIVDGARTVISXCIRSAIPGYMGVPPD 586
F HLL + G+D + + YG L W S L+ + R S PG PD
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWISKLPGLLREIGRLAASI----QAPGSHDASPD 852
Query: 587 NTV 595
+
Sbjct: 853 TAL 855
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 9.8
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -1
Query: 483 RGST--PYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQPAAGCS 310
RG T P SVD S+PPS P S + S P SA+ A Q A G +
Sbjct: 43 RGLTIPPPPSVDHSAPPSGPP---PSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAA 99
Query: 309 IQ 304
Q
Sbjct: 100 PQ 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,254
Number of Sequences: 5004
Number of extensions: 42286
Number of successful extensions: 133
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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