Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0686
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    27   3.3  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   7.6  

>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 676 PPLTIKKILNGYGKAVYMVXFYLLDISSKGNFSN 777
           PP   +K++N    +VY V +Y+  I  K  F N
Sbjct: 118 PPHEFEKVMNINTNSVYRVAYYMGKIFKKQGFGN 151


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 247 MFNTIVRYLIGYTIPKADWSEVFTSSPRIK 336
           +FN  + Y IGY  PKA   E+  ++ + K
Sbjct: 528 LFNDTILYNIGYGNPKASNDEIVEAAKKAK 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,877
Number of Sequences: 5004
Number of extensions: 56643
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)