Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0685
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...   114   1e-26
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    28   1.5  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    26   5.9  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   5.9  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   7.8  

>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score =  114 bits (275), Expect = 1e-26
 Identities = 50/88 (56%), Positives = 68/88 (77%)
 Frame = +2

Query: 254 GYHNCCVPHAIMRNMFENPGWTTQYTPYQPXVAQGRLESLLNYQTMVSDMTGLDVANASL 433
           GY+N  +P AI RN+ ENP W TQYTPYQ  ++QGRLES++NYQTM++D+TGL ++NASL
Sbjct: 135 GYYNVKLPAAIQRNVLENPEWYTQYTPYQAEISQGRLESMMNYQTMIADLTGLSISNASL 194

Query: 434 LDEGTAAAEALSLCHRHNKRTKFVVLND 517
           LDEGTAA EA+ +   ++K+ +   L D
Sbjct: 195 LDEGTAAGEAMVMLMANDKKKRKTFLVD 222



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
 Frame = +3

Query: 51  GPRXQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQ-------GLMNISE---PI--SEYDL 194
           GP   D    L+ LGYK  D    D +P  ++         G +N +E   P+  SE + 
Sbjct: 55  GPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRTPESQLMAFGSVNPNEKNPPVNYSESEF 114

Query: 195 IERVRLIAEKNEIWRSYIGM 254
                 +A +N++ +S+IGM
Sbjct: 115 TTLANNVANQNKLIKSFIGM 134


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +2

Query: 317 TTQYTPY--QPXVAQGRLESLLNYQTMVSDMTGLDVANASLLDEGTAAAEALSLCHRHNK 490
           TT+ +PY      A G +E  L       D   +D + + L D G      L++    ++
Sbjct: 99  TTEESPYVSPEDAASGDIEYALE-----DDYGRIDCSGSFLYDAGVVTGVVLAVLGHEDE 153

Query: 491 RTKFVVLNDCXP 526
           + +FVV++ C P
Sbjct: 154 QGRFVVVDVCFP 165


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 313 SGIFKHVPHDGMRYATIVVAIPM 245
           S IF +VPH+   Y   +++IP+
Sbjct: 213 SNIFSNVPHESSFYRNSIISIPI 235


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 611 PRGIFPQCSYNALILGGLVYDYSGLA 688
           P  + PQ S+NA +  GL+  YSG+A
Sbjct: 338 PNSLVPQLSWNAEVTAGLM--YSGIA 361


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 377 NYQTMVSDMTGLDVANASLLDEGTAAAEALSLCHRHNKRT 496
           ++  ++ D+    V + +L+D+ TA +   SLC+R N R+
Sbjct: 360 DFYEIIRDVCQDMVESVNLIDQYTAKSGKTSLCYRVNYRS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,929
Number of Sequences: 5004
Number of extensions: 62986
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)