Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0685
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169...   126   3e-29
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554...   126   3e-29
04_01_0214 + 2725866-2725972,2726059-2726157,2726317-2726419           30   2.0  
12_01_0815 + 7495939-7496961                                           29   6.2  

>06_03_0741 -
           24016204-24016298,24016408-24016525,24016805-24016903,
           24016992-24017117,24017200-24017277,24017366-24017554,
           24018186-24018338,24018785-24018898,24019576-24019761,
           24019845-24019970,24020053-24020248,24020338-24020438,
           24020533-24020610,24020707-24020952,24021063-24022253
          Length = 1031

 Score =  126 bits (303), Expect = 3e-29
 Identities = 56/94 (59%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
 Frame = +2

Query: 254 GYHNCCVPHAIMRNMFENPGWTTQYTPYQPXVAQGRLESLLNYQTMVSDMTGLDVANASL 433
           GY+N  VP  I+RN+ ENP W TQYTPYQ  +AQGRLESLLNYQTMV+D+TGL ++NASL
Sbjct: 147 GYYNTHVPAVILRNLMENPAWYTQYTPYQAEIAQGRLESLLNYQTMVADLTGLPMSNASL 206

Query: 434 LDEGTAAAEALSLCH--RHNKRTKFVVLNDCXPR 529
           LDE TAAAEA+++C+    +K+  F++ ++C P+
Sbjct: 207 LDEATAAAEAMAMCNGILKSKKKTFLIASNCHPQ 240


>01_06_0461 +
           29553709-29554905,29555051-29555296,29555387-29555464,
           29555557-29555657,29555745-29555940,29556022-29556147,
           29556231-29556416,29556921-29557034,29557522-29557674,
           29558287-29558475,29558568-29558645,29558728-29558853,
           29558942-29559040,29559315-29559432,29559531-29559625
          Length = 1033

 Score =  126 bits (303), Expect = 3e-29
 Identities = 56/94 (59%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
 Frame = +2

Query: 254 GYHNCCVPHAIMRNMFENPGWTTQYTPYQPXVAQGRLESLLNYQTMVSDMTGLDVANASL 433
           GY+N  VP  I+RN+ ENP W TQYTPYQ  +AQGRLESLLNYQTMV+D+TGL ++NASL
Sbjct: 149 GYYNTHVPAVILRNLMENPAWYTQYTPYQAEIAQGRLESLLNYQTMVADLTGLPMSNASL 208

Query: 434 LDEGTAAAEALSLCH--RHNKRTKFVVLNDCXPR 529
           LDE TAAAEA+++C+    +K+  F++ ++C P+
Sbjct: 209 LDEATAAAEAMAMCNGILKSKKKTFLIASNCHPQ 242


>04_01_0214 + 2725866-2725972,2726059-2726157,2726317-2726419
          Length = 102

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 321 HNIRRISQXSHKVDLKACLITKRW 392
           HN RR+S  S+KV L+  LI +RW
Sbjct: 62  HNFRRMSSNSNKVILEWMLIIRRW 85


>12_01_0815 + 7495939-7496961
          Length = 340

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 426 LPYWMRVRLLPKHFHCVTGITNEQSSSC 509
           +P W+++ L P  +   TG+ ++ SSSC
Sbjct: 11  VPPWLKLSLGPVAYGVATGVVDDDSSSC 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,464,302
Number of Sequences: 37544
Number of extensions: 456033
Number of successful extensions: 859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)