Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0685
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)                      131   6e-31

>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
          Length = 767

 Score =  131 bits (317), Expect = 6e-31
 Identities = 57/75 (76%), Positives = 68/75 (90%)
 Frame = +2

Query: 254 GYHNCCVPHAIMRNMFENPGWTTQYTPYQPXVAQGRLESLLNYQTMVSDMTGLDVANASL 433
           GY++C VP  I+RN+ ENPGWTT YTPYQP +AQGRLESLLN+QTMVSD+TGLD+ANASL
Sbjct: 52  GYYSCHVPTTILRNILENPGWTTPYTPYQPELAQGRLESLLNFQTMVSDLTGLDIANASL 111

Query: 434 LDEGTAAAEALSLCH 478
           LDE TAAAEA++LC+
Sbjct: 112 LDEATAAAEAMALCY 126



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/51 (45%), Positives = 37/51 (72%)
 Frame = +3

Query: 102 SLDQLTNDAVPKKIQFQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGM 254
           ++++L    VP  I+++  + +SE ISE DL+ R+R I++ N+IWRSYIGM
Sbjct: 1   NMEELIEKTVPSSIRYREDLQLSEAISEPDLLSRLRQISKGNQIWRSYIGM 51



 Score = 33.5 bits (73), Expect = 0.22
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 526 QTLAVVHTRMDALGLDV-LVVPDVRHVDFAQRDISAVLLQCPDTRG 660
           + +A+ ++ +   G  + +++ D    DF+ +DIS VL Q PDT G
Sbjct: 120 EAMALCYSTLGPEGNGIEIIIGDKNSFDFSNKDISGVLFQYPDTNG 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,957,952
Number of Sequences: 59808
Number of extensions: 503835
Number of successful extensions: 1048
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)