Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0685
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...   116   2e-26
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    29   4.2  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    29   4.2  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    29   4.2  
AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    29   5.6  
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    28   9.7  

>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score =  116 bits (280), Expect = 2e-26
 Identities = 53/92 (57%), Positives = 69/92 (75%)
 Frame = +2

Query: 254 GYHNCCVPHAIMRNMFENPGWTTQYTPYQPXVAQGRLESLLNYQTMVSDMTGLDVANASL 433
           GY++  VP  I RN+ +N GW +QYTPYQ  ++QGRLESLLN+QTM+++MTGL   NASL
Sbjct: 104 GYYDTIVPAVISRNILQNIGWISQYTPYQAEISQGRLESLLNFQTMIAEMTGLPTTNASL 163

Query: 434 LDEGTAAAEALSLCHRHNKRTKFVVLNDCXPR 529
           LDE TA+AEA++L  R  KR K VV + C P+
Sbjct: 164 LDEATASAEAVALAARTTKRNKIVVDSFCHPQ 195



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 29/68 (42%), Positives = 43/68 (63%)
 Frame = +3

Query: 51  GPRXQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLMNISEPISEYDLIERVRLIAEKNE 230
           GPR  +   MLD +GYK LD LT   VP  I+ +  + +  P+ EY +++ +  IA +N+
Sbjct: 36  GPRRLEQQQMLDFIGYKDLDDLTGTNVPNMIKAEKALELPAPLDEYKMLKELEAIAAQNK 95

Query: 231 IWRSYIGM 254
           I+RSYIGM
Sbjct: 96  IYRSYIGM 103



 Score = 35.9 bits (79), Expect = 0.037
 Identities = 23/94 (24%), Positives = 42/94 (44%)
 Frame = +1

Query: 493 NKVRRAERLXPQTLAVVHTRMDALGLDVLVVPDVRHVDFAQRDISAVLLQCPDTRGXXXX 672
           NK+       PQ L V+ TR   LG+D+ V   +    F  + ++AV++Q P+T G    
Sbjct: 184 NKIVVDSFCHPQNLDVIRTRSGPLGIDIEVSDSIEGYAFDDK-VAAVVVQYPNTEGRIHQ 242

Query: 673 XXXXXXXXXXARDIVVMATRFXGRSALIRTPAGI 774
                      + +V+M       + ++R+P  +
Sbjct: 243 FDELIESAHKNKSLVIMVCDLLSLT-ILRSPGDL 275


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 438 MRVRLLPK-HFHCVTGITNEQSSSC*TIASPDASCSAH*NGCAGLRCSGS 584
           M V+L  + ++HCV   T+  + +   +A PD  CS    G  G  C G+
Sbjct: 237 MGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ--KGAGGYECPGN 284


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 438 MRVRLLPK-HFHCVTGITNEQSSSC*TIASPDASCSAH*NGCAGLRCSGS 584
           M V+L  + ++HCV   T+  + +   +A PD  CS    G  G  C G+
Sbjct: 215 MGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ--KGAGGYECPGN 262


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 438 MRVRLLPK-HFHCVTGITNEQSSSC*TIASPDASCSAH*NGCAGLRCSGS 584
           M V+L  + ++HCV   T+  + +   +A PD  CS    G  G  C G+
Sbjct: 237 MGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ--KGAGGYECPGN 284


>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 24  EWTSRVDTXGPRXQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLMNISEPI 179
           EW  RV +     ++ V ++D+  +   D    DAV + +QF    N+ EPI
Sbjct: 494 EWFERVASEYEACRERVGLMDMSSFSKYDITGEDAV-EYLQFLCSANVDEPI 544


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
           protein Y48G9A.1 protein.
          Length = 1725

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = +3

Query: 87  LLGYKSLDQLTNDAVPKKIQFQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGMATTI 266
           L  + SLD   +   PK + F G  N  +   +       RL  + N+I    IGM   I
Sbjct: 62  LFEHFSLDSGKDQIFPKFLNFPGATNAFKATQQL-----FRLANDTNDIGDRVIGMVREI 116

Query: 267 VAYL---MPS-*GTCLKIPDGLHNIRRI 338
           +AY+    PS  G  L+I    H + RI
Sbjct: 117 LAYVGNEQPSVRGAALEILGAPHLLMRI 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,482
Number of Sequences: 27780
Number of extensions: 370861
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)