Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0685
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 355 LCDXWLIRRILCSPSGIFKHVPHDGMRYATIVVAI 251
           +CD ++   + CS S IF  V     RY  +   I
Sbjct: 258 VCDFYIAMDVTCSTSSIFNLVAISIDRYIAVTQPI 292


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 367 FKSTLCDXWLIRRILCSPSGI 305
           F    CD W+   ++CS + I
Sbjct: 93  FGPRFCDTWIAFDVMCSTASI 113


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 293 NMFENPGWTTQYTPYQPXVAQGRLE 367
           N + +P  T+ Y PY P    GR E
Sbjct: 130 NGYASPMSTSSYDPYSPNSKIGRDE 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,327
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)