Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0685
(855 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 126 2e-29
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 124 6e-29
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 35 0.079
At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative / 4-c... 32 0.42
At2g22710.1 68415.m02690 myb family protein 31 1.3
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 31 1.3
At2g41760.1 68415.m05162 expressed protein 30 1.7
At4g01980.1 68417.m00264 hypothetical protein contains similarit... 30 2.3
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 30 2.3
At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containi... 29 5.2
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 126 bits (304), Expect = 2e-29
Identities = 55/94 (58%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
Frame = +2
Query: 254 GYHNCCVPHAIMRNMFENPGWTTQYTPYQPXVAQGRLESLLNYQTMVSDMTGLDVANASL 433
GY+N VP I+RN+ ENP W TQYTPYQ ++QGRLESLLNYQT+++D+TGL ++NASL
Sbjct: 161 GYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTVITDLTGLPMSNASL 220
Query: 434 LDEGTAAAEALSLCHR--HNKRTKFVVLNDCXPR 529
LDEGTAAAEA+++C+ K+ FV+ ++C P+
Sbjct: 221 LDEGTAAAEAMAMCNNILKGKKKTFVIASNCHPQ 254
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +3
Query: 78 MLDLLGYKSLDQLTNDAVPKKIQFQGLMN---ISEPISEYDLIERVRLIAEKNEIWRSYI 248
M + G+ +L+ L + VPK I+ + E ++E +IE + +A KN++++S+I
Sbjct: 99 MANYCGFDNLNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEHMSDLASKNKVFKSFI 158
Query: 249 GM 254
GM
Sbjct: 159 GM 160
>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P49361 Glycine dehydrogenase [decarboxylating] A,
mitochondrial precursor (EC 1.4.4.2) {Flaveria
pringlei}; contains Pfam profile PF02347: Glycine
cleavage system P-protein
Length = 1037
Score = 124 bits (300), Expect = 6e-29
Identities = 54/94 (57%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
Frame = +2
Query: 254 GYHNCCVPHAIMRNMFENPGWTTQYTPYQPXVAQGRLESLLNYQTMVSDMTGLDVANASL 433
GY+N VP I+RN+ ENP W TQYTPYQ ++QGRLESLLN+QT+++D+TGL ++NASL
Sbjct: 155 GYYNTHVPTVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQTVITDLTGLPMSNASL 214
Query: 434 LDEGTAAAEALSLCHR--HNKRTKFVVLNDCXPR 529
LDEGTAAAEA+++C+ K+ FV+ ++C P+
Sbjct: 215 LDEGTAAAEAMAMCNNILKGKKKTFVIASNCHPQ 248
Score = 35.9 bits (79), Expect = 0.034
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 78 MLDLLGYKSLDQLTNDAVPKKIQFQGLM--NISEPISEYDLIERVRLIAEKNEIWRSYIG 251
M G+ +D L + VPK I+ + ++E +I+ + +A KN++++S+IG
Sbjct: 94 MAKFCGFDHIDSLIDATVPKSIRLDSMKFSKFDAGLTESQMIQHMVDLASKNKVFKSFIG 153
Query: 252 M 254
M
Sbjct: 154 M 154
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 372 CLITKRWLVT*LDWTLLMLPYWMRVRLLPKHFHCVTGITNEQSSSC 509
C++ +RW+ + L+ LP WMR+R +P +++ T T ++ +SC
Sbjct: 102 CVVMERWIEKSTEEYLMFLPVWMRLRNIPVNYY--TQDTIKKIASC 145
>At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative /
4-coumaroyl-CoA synthase, putative similar to 4CL2
[gi:12229665] from Arabidopsis thaliana, 4CL1
[gi:12229631] from Nicotiana tabacum; contains Pfam
AMP-binding enzyme domain PF00501; acyl-activating
enzyme superfamily; identical to cDNA 4-coumarate-CoA
ligase-like protein (At4g05160) GI:29893226
Length = 544
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 87 LLGYKSLDQLTNDAVPKKIQFQGLMNISEPISEYDLIE 200
LLG K ++ + K + F +M +SEP+SEY +E
Sbjct: 149 LLGSKDTVEIPPGSNSKILSFDNVMELSEPVSEYPFVE 186
>At2g22710.1 68415.m02690 myb family protein
Length = 391
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 6 SARAQIEWTSRVDTXGPRXQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLMNISEPISE 185
+A+A+ + T V G + + L K D D K + L++ +EP+SE
Sbjct: 319 AAKAKAKMTPTVK--GEEVNSVEHLTSLWDLKEKDWDRKDKQSKNQMLESLLSRTEPLSE 376
Query: 186 YDLIERVRLIAE 221
DL+ + +LI E
Sbjct: 377 CDLVLKKKLIEE 388
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 372 CLITKRWLVT*LDWTLLMLPYWMRVRLLPKHFH 470
C+I RW+ + L++LP W+R+R +P +++
Sbjct: 102 CVIMDRWVEKPPEEYLMILPIWIRLRNIPVNYY 134
>At2g41760.1 68415.m05162 expressed protein
Length = 221
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 290 RNMFENPG-WTTQYTPYQPXVAQ-GRLESLLNYQTM 391
R+M E G WT Q PY+P VAQ G L +L Y M
Sbjct: 147 RHMKEPDGSWTAQPPPYEPIVAQDGILHNLSEYIAM 182
>At4g01980.1 68417.m00264 hypothetical protein contains similarity
to hypothetical proteins of [Arabidopsis thaliana]
Length = 302
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +3
Query: 6 SARAQIEWTSRVDTXGPRXQDIVTMLDLLGYKSLDQLTNDAVPKKIQFQGLMNISEPISE 185
+A+A+ + T V G + + L K D D K + L++ +EP+SE
Sbjct: 230 AAKAKAKKTPTVK--GEEVNSVEHLTSLWDLKERDWDRKDKQSKNQMLESLLSRTEPLSE 287
Query: 186 YDLIERVRLIAE 221
DL+ + +LI E
Sbjct: 288 CDLVLKKKLIEE 299
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 248 DVRSPYFILFSYQPNPFY 195
DV+S Y I FS+ PNPF+
Sbjct: 112 DVKSGYSITFSFNPNPFF 129
>At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 681
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/94 (23%), Positives = 42/94 (44%)
Frame = -3
Query: 427 SISNVQSSHVTNHRLVIKQAFKSTLCDXWLIRRILCSPSGIFKHVPHDGMRYATIVVAIP 248
S+ +QSS + LV+ A ++L + R + + H G+ Y +++V
Sbjct: 27 SLLRLQSSSAVSDDLVLHSA--ASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVP-- 82
Query: 247 M*DRHISFFSAINLTRSIRSYSLMGSLIFIRPWN 146
+ ++F+SA NL +S ++ PWN
Sbjct: 83 ---KLVTFYSAFNLHNEAQSIIENSDILHPLPWN 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,378,950
Number of Sequences: 28952
Number of extensions: 344476
Number of successful extensions: 684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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