Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0684
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    29   0.77 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.1  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   5.4  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    25   9.5  

>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 407 FTADEVKFRCAIPECDTPTPSFNATWTAFALPNTPIPATEWAPLL 541
           F+A   KF        + TPS N +      P+TP P   WAP +
Sbjct: 145 FSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTI 189


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 654 SQPQCSXRVEVLRLQVYGGSALLGNDCTFCPVL 556
           S  Q + RVE+L+L  YG + L     TF P +
Sbjct: 838 SHEQITIRVEMLKLLSYGSNVLAKEPNTFYPAI 870


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 534 GAHSVAGIGVFGKANAVHVALKLGVGVSHSGIA 436
           GA+S+  I VFG+A A+H+   L     H  +A
Sbjct: 447 GANSLLDIVVFGRACALHIKDTLEPNTPHKPLA 479


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 613 QPEYFDAXRTLGLRXTSVRGLQ*H 684
           QPEY  A   LGL    + G+Q H
Sbjct: 182 QPEYIAAVSGLGLSNDGIEGIQVH 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,328
Number of Sequences: 5004
Number of extensions: 53845
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)