Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0684
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 30 1.9
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 30 1.9
01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848 30 1.9
12_01_0181 + 1341829-1343022 30 2.5
11_01_0181 + 1435031-1436224 30 2.5
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 29 4.3
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 29 4.3
06_02_0201 - 12960493-12960606,12960727-12960853,12961100-129612... 29 5.7
05_03_0240 + 10813886-10814060,10814164-10814275,10814901-108150... 29 5.7
08_02_1153 + 24724469-24724811,24724910-24725021,24725661-247258... 28 7.5
12_01_0613 + 5060150-5060320,5062255-5062359,5064057-5064143,506... 28 9.9
>12_01_0063 -
535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 449 CDTPTPSFNATWTAFALPNTPIPATEWAPLLEDRFNRTG--QNVQSLPNKADPPYTCSLS 622
C+ F+ A A P+T P ++W P +DR +TG V L DPP +S
Sbjct: 73 CEQRHEGFDEAAAAAAGPSTSGPVSKWRP--KDRM-KTGCVALVLCLNISVDPPDVIKIS 129
Query: 623 TSTRXEHW 646
R E W
Sbjct: 130 PCARKECW 137
>11_01_0061 -
456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 449 CDTPTPSFNATWTAFALPNTPIPATEWAPLLEDRFNRTG--QNVQSLPNKADPPYTCSLS 622
C+ F+ A A P+T P ++W P +DR +TG V L DPP +S
Sbjct: 68 CEQRHEGFDEAAAAAAGPSTSGPVSKWRP--KDRM-KTGCVALVLCLNISVDPPDVIKIS 124
Query: 623 TSTRXEHW 646
R E W
Sbjct: 125 PCARKECW 132
>01_06_1029 - 33923733-33924679,33925448-33925459,33925770-33925848
Length = 345
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 413 ADEVKFRCAIPECDTPTPSFNATWTAFALPNTPIPATEW 529
AD K R + P+ D P W +F N P+PAT W
Sbjct: 123 ADLEKSRRSYPKRDNTAPD---GWDSFIFTNKPVPATGW 158
>12_01_0181 + 1341829-1343022
Length = 397
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 557 RTGQNVQSLPNKADPPYTCSLSTSTRXEHWGCDXLVYEDYNSML 688
RT Q QSL Y CSL S H CD L+ YN+ L
Sbjct: 97 RTHQ-FQSLARFTGQDYDCSLEDSPFTVHASCDGLLLMSYNNYL 139
>11_01_0181 + 1435031-1436224
Length = 397
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 557 RTGQNVQSLPNKADPPYTCSLSTSTRXEHWGCDXLVYEDYNSML 688
RT Q QSL Y CSL S H CD L+ YN+ L
Sbjct: 97 RTHQ-FQSLARFTGQDYDCSLEDSPFTVHASCDGLLLMSYNNYL 139
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 456 VSHSGIAHLNFTSSAVNT*LKLHIARKESLNDSSSKNSNWYFPKLPSSLRMPSRLKE 286
V G+ +NF + K+H+ RK S+ D K S P+L S++++P + E
Sbjct: 87 VRQMGLGDVNFIWTLWE--FKVHVMRKSSVPDLREKLSGVQRPQLNSTVQIPKSVPE 141
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 234 LMCSHCSPSYVFALRLIALSLQNEILFRIQLLKYSVFN*NEAD 106
L+CSH SP ++RL+ L+ E +Q +S F+ NEA+
Sbjct: 717 LLCSHSSPKVRPSMRLVMQYLEREA--TLQDFAFSFFSINEAN 757
>06_02_0201 -
12960493-12960606,12960727-12960853,12961100-12961276,
12961864-12961975,12964141-12964144
Length = 177
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 592 SGPAVHLQPEYFDAXRTLGLRXTSV 666
SGP VH E++D RTL R S+
Sbjct: 100 SGPTVHFVDEHYDIGRTLAQRVVSM 124
>05_03_0240 +
10813886-10814060,10814164-10814275,10814901-10815077,
10815287-10815413,10815529-10815642
Length = 234
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 592 SGPAVHLQPEYFDAXRTLGLRXTSVR 669
SGP VH E++D RTL R V+
Sbjct: 157 SGPTVHFVDEHYDTGRTLAQRVVPVQ 182
>08_02_1153 +
24724469-24724811,24724910-24725021,24725661-24725837,
24726046-24726172,24726295-24726408
Length = 290
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 592 SGPAVHLQPEYFDAXRTLGLRXTSV 666
SGP VH E++D RTL R V
Sbjct: 213 SGPTVHFVDEHYDTGRTLAQRVVPV 237
>12_01_0613 +
5060150-5060320,5062255-5062359,5064057-5064143,
5064265-5064318,5064402-5064547,5064651-5064804,
5064891-5065028,5065454-5065527,5065615-5065756,
5066396-5066474,5067326-5067423
Length = 415
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 431 RCAIPECDTPTPSFNATWTAFALPNT 508
RCAIP+ D P N++ + +LP T
Sbjct: 171 RCAIPDPDVPQSCVNSSEPSISLPGT 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,608,076
Number of Sequences: 37544
Number of extensions: 358142
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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