Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0684
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10884| Best HMM Match : Antimicrobial11 (HMM E-Value=0.091)         32   0.47 
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)                         31   1.1  
SB_15787| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_32590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  
SB_11090| Best HMM Match : NPV_P10 (HMM E-Value=5.7)                   28   7.7  

>SB_10884| Best HMM Match : Antimicrobial11 (HMM E-Value=0.091)
          Length = 479

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 440 IPECDTPTPSFNATWTAFALPNTPIPATEWA-PLLEDRFNRTGQNVQSLPNKADPPYTCS 616
           +P  DTP P+  +T      PN  +P  +   P      NR G+    LP + D PY   
Sbjct: 238 LPTEDTPNPTHLSTDNRKGRPNLKLPTEDTPYPTHLSTDNRKGRPNLKLPTE-DTPYPTH 296

Query: 617 LSTSTR 634
           LST  R
Sbjct: 297 LSTDNR 302



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 452 DTPTPSFNATWTAFALPNTPIPATEWA-PLLEDRFNRTGQNVQSLPNKADPPYTCSLSTS 628
           DTP PS  +T      PN  +P  +   P      NR G+    LP + D P    LST 
Sbjct: 2   DTPNPSHLSTDNRKGRPNLKLPTEDTPNPTHLSTDNRKGRPNLKLPTE-DTPNPSHLSTD 60

Query: 629 TR 634
           TR
Sbjct: 61  TR 62



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 440 IPECDTPTPSFNATWTAFALPNTPIPATEWA-PLLEDRFNRTGQNVQSLPNKADPPYTCS 616
           +P  DTP PS  +T T    PN  +P  +   P       R G+    LP +  P  T  
Sbjct: 46  LPTEDTPNPSHLSTDTREGRPNLKLPTEDTPNPTHLSTDTREGRPNLKLPTENIPDPT-H 104

Query: 617 LSTSTR 634
           LST TR
Sbjct: 105 LSTGTR 110



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 440 IPECDTPTPSFNATWTAFALPNTPIPATEWA-PLLEDRFNRTGQNVQSLPNKADPPYTCS 616
           +P  DTP P+  +T      PN  +P  +   P      NR  +    LP + D PY   
Sbjct: 142 LPTEDTPDPTHLSTDNRKGRPNLKLPTEDTPYPTHLSTDNRKERPNLKLPTE-DTPYPTH 200

Query: 617 LSTSTR 634
           LST  R
Sbjct: 201 LSTDNR 206



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 440 IPECDTPTPSFNATWTAFALPNTPIPATEWA-PLLEDRFNRTGQNVQSLPNKADPPYTCS 616
           +P  DTP P+  +T      PN  +P      P       R G+    LP + D PY   
Sbjct: 310 LPTEDTPNPTHLSTDNRKGRPNLKLPTENIPDPTHLSTDTREGRPNLKLPTE-DTPYPTH 368

Query: 617 LSTSTR 634
           LST  R
Sbjct: 369 LSTDNR 374


>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
          Length = 893

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 435 HLNFTSSAVNT*LKLHIARKESLN-DSSSKNSNWYFPKLPSSLRMPSRLKESDN 277
           H N   +AV+   +L  ARK+SL  D +S +++W   K+ S+L +  +    DN
Sbjct: 204 HTNIAENAVSVYCRLGFARKKSLEIDETSLHASW-SEKISSNLALSRKYGSRDN 256


>SB_15787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 615 LQVYGGSALLGNDCTF---CPVLLNRSSSRGAHSVAG 514
           L VYG +  L N+ TF   CP ++ + S++  H VAG
Sbjct: 33  LAVYGLNETLVNETTFARVCPAVVQQVSNQACHRVAG 69


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -1

Query: 749  PVRTVXIIVXFQGSQPSQTQPTCYCNPRTLVXRSPNVLXASKYSGCRCTAGP 594
            P ++   +V  Q SQPS+T  +    P  +    P+V+ + +YS  + T GP
Sbjct: 1805 PPKSPPKLVSPQESQPSRTSTSPERPPPLVTHTIPSVISSPQYSASKGTLGP 1856


>SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 161 ISFCKLSAINLSANTYDGEQ*LHIKVKRDDNPYK 262
           +SF  LS++ LS   +DG+Q  H+ ++ D  P K
Sbjct: 147 VSFDLLSSVALSGTNHDGDQPPHLTLRDDTVPVK 180


>SB_32590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +2

Query: 263 MVESQLSDSFNLDGILSELGSFGKYQXXXXXXXXXXXXXXAMCNFNYVFTADEVKFRCAI 442
           MV  +  D  ++D ILS +G FG +Q                     VF   E  ++CA 
Sbjct: 53  MVALERIDVMDIDKILSSIGGFGFFQKRNSFILGLVIFIATFQTVLIVFVGMEPPWKCA- 111

Query: 443 PECDTPTPSFNATWTA 490
              D+ T + N T+++
Sbjct: 112 --QDSTTCTLNGTFSS 125


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 536  LLEDRFNRTGQNVQSLPNKADPPYTCSLSTST 631
            LLE +  +T   V SLP   D    C +S ST
Sbjct: 1119 LLEKQLTKTSNKVSSLPTSLDREEECRMSEST 1150


>SB_11090| Best HMM Match : NPV_P10 (HMM E-Value=5.7)
          Length = 194

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 536 LLEDRFNRTGQNVQSLPNKADPPYTCSLSTST 631
           LLE +  +T   V SLP   D    C +S ST
Sbjct: 93  LLEKQLTKTSNKVSSLPTSLDREEECRMSEST 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,936,820
Number of Sequences: 59808
Number of extensions: 418411
Number of successful extensions: 1058
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)