Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0684
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02770.1 68415.m00220 COP1-interacting protein-related simila...    29   4.7  
At3g23760.1 68416.m02987 expressed protein                             28   6.3  
At1g34120.3 68414.m04233 inositol polyphosphate 5-phosphatase I ...    28   6.3  
At1g34120.2 68414.m04232 inositol polyphosphate 5-phosphatase I ...    28   6.3  
At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I ...    28   6.3  

>At2g02770.1 68415.m00220 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646, COP1-interacting protein 4.1
           (CIP4.1) [Arabidopsis thaliana] GI:13160650
          Length = 548

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 407 FTADEVKFRCAIPECDTPTPSFNATWT 487
           ++ADEVKF  AIP+ +     F   WT
Sbjct: 473 YSADEVKFLSAIPDPEVQRKEFIKLWT 499


>At3g23760.1 68416.m02987 expressed protein
          Length = 194

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 647 PNVLXASKYSGCRCTAGPLC*VTTARSVLFY*TDLLAEAPI 525
           PN L  +KY G R   G LC V      L+Y  D++ + P+
Sbjct: 113 PNWLDGAKYMGQRHVNGFLCNVWEKVEFLWYYEDVVTKRPV 153


>At1g34120.3 68414.m04233 inositol polyphosphate 5-phosphatase I
           (IP5PI) nearly identical to inositol polyphosphate
           5-phosphatase I [Arabidopsis thaliana] GI:10444261
          Length = 589

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 515 PATEWAPLLEDRFNRTGQNVQSLPNKADPP 604
           PA EW  L+ D  NR       + + +DPP
Sbjct: 161 PALEWENLIRDALNRVQPRKLKIKSHSDPP 190


>At1g34120.2 68414.m04232 inositol polyphosphate 5-phosphatase I
           (IP5PI) nearly identical to inositol polyphosphate
           5-phosphatase I [Arabidopsis thaliana] GI:10444261
          Length = 590

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 515 PATEWAPLLEDRFNRTGQNVQSLPNKADPP 604
           PA EW  L+ D  NR       + + +DPP
Sbjct: 161 PALEWENLIRDALNRVQPRKLKIKSHSDPP 190


>At1g34120.1 68414.m04231 inositol polyphosphate 5-phosphatase I
           (IP5PI) nearly identical to inositol polyphosphate
           5-phosphatase I [Arabidopsis thaliana] GI:10444261
          Length = 586

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 515 PATEWAPLLEDRFNRTGQNVQSLPNKADPP 604
           PA EW  L+ D  NR       + + +DPP
Sbjct: 157 PALEWENLIRDALNRVQPRKLKIKSHSDPP 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,626
Number of Sequences: 28952
Number of extensions: 279715
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)