Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0683
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 184 5e-47
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 177 7e-45
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 150 9e-37
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 6e-30
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 90 2e-18
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 4e-12
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 50 1e-06
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 40 0.003
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 2.8
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 29 4.9
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 28 6.5
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 28 6.5
SB_36103| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 184 bits (449), Expect = 5e-47
Identities = 113/221 (51%), Positives = 134/221 (60%), Gaps = 4/221 (1%)
Frame = +1
Query: 61 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNXTTPSYVAFTDTERLIGDAAKNQVA 240
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGN TTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 241 MNP-NKQYSMPNVSSDVSSKMLLCKPT*STGLXRLSVMEANLRSR*HIRVK--TKPFSPR 411
MNP N + + ++ + V+ R + + K K F P
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVAR---DMTHWPFHVIREGERPKIQVEFKGEKKSFFPE 117
Query: 412 KSVPWCLRK*RELPK-LISAKLCRMQLSRFPRT**LSKTSHKDAGTISG*TFSESSMXPT 588
+ L K +E + + AK+ ++ + + KDAGTI+G PT
Sbjct: 118 EISSMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPT 177
Query: 589 AAAXAYGLDKXGTGXRNVLIFYLGGGTFDVSILTIEDGIFE 711
AAA AYGLDK RNVLI+ LGGGTFDVS+LTIEDGIFE
Sbjct: 178 AAAIAYGLDKKVGVERNVLIYDLGGGTFDVSVLTIEDGIFE 218
Score = 135 bits (327), Expect = 3e-32
Identities = 67/112 (59%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPXXVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
P+ T+FDAKRLIGRKF+D V DM HWP V+ +G +PKI+V +KGE K+FFPEE+SSM
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 426 VLTKMKGTAEAYLGKTVQNAVITVSAYLMTLQDXPQRCRYHLR-LNVLRIIN 578
VLTKMK TAEAYLG V +AV+TV AY Q + + LNVLRIIN
Sbjct: 123 VLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIIN 174
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 177 bits (431), Expect = 7e-45
Identities = 107/221 (48%), Positives = 135/221 (61%), Gaps = 4/221 (1%)
Frame = +1
Query: 61 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNXTTPSYVAFTDTERLIGDAAKNQVA 240
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGN TTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 241 MNPNKQYSMPNVSSDVSSKMLLCKPT*STGLXRLSVMEANLRSR*HIRVK--TKPFSPRK 414
+NP + ++ + + + L ++ N + + + K K F+ +
Sbjct: 61 LNP--ENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEE 118
Query: 415 SVPWCLRK*RELPKLISAKLCRMQLSRFPRT**LS-KTSHKDAGTISG*TFSESSMXPTA 591
L K +E + + + P S + + KDAGTI+G PTA
Sbjct: 119 ISSMVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTA 178
Query: 592 AAXAYGLDKXGTGXRNVLIFYLGGGTFDVSILTIEDG-IFE 711
AA AYGLDK +G +NVLIF LGGGTFDVSILTI+DG +FE
Sbjct: 179 AALAYGLDKSLSGEKNVLIFDLGGGTFDVSILTIDDGSLFE 219
Score = 136 bits (328), Expect = 2e-32
Identities = 69/112 (61%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPXXVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
P+ TIFDAKRLIGR+++DATVQ+DMK WP ++SD KPKI+V YKGE KTF EE+SSM
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 426 VLTKMKGTAEAYLGKTVQNAVITVSAYLMTLQDXPQRCRYHLR-LNVLRIIN 578
VL KMK TAEAYLG+ V +AVITV AY Q + + LNVLR+IN
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVIN 174
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 150 bits (364), Expect = 9e-37
Identities = 97/221 (43%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Frame = +1
Query: 79 VGIDLGTTYSCVGVFQHGKVEIIANDQGNXTTPSYVAFTDT-ERLIGDAAKNQVAMNPNK 255
+GIDLGTTYSCVGVF++G+VEIIANDQGN TPSYVAFT+ ERLIGD AKNQ+ NP
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNPE- 762
Query: 256 QYSMPNVSSDVSSKMLLCKPT*STGLXR------LSVMEANLRSR*HIRVK--TKPFSPR 411
N D +K L+ + T + V++ N + ++VK K F+
Sbjct: 763 -----NTVFD--AKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAE 815
Query: 412 KSVPWCLRK*RELPKLISAKLCRMQLSRFPR-T**LSKTSHKDAGTISG*TFSESSMXPT 588
+ L K +E + K + P + + KDAG I+G T PT
Sbjct: 816 EISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPT 875
Query: 589 AAAXAYGLDKXGTGXRNVLIFYLGGGTFDVSILTIEDGIFE 711
AAA AYG+DK G +N+L+F LGGGTFDVS+LTI++G+FE
Sbjct: 876 AAAIAYGMDKK-EGEKNILVFDLGGGTFDVSLLTIDNGVFE 915
Score = 111 bits (268), Expect = 4e-25
Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPXXVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 425
P+ T+FDAKRLIGR ++D +VQ D+K +P VV KP ++V K E KTF EE+S+M
Sbjct: 761 PENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAM 820
Query: 426 VLTKMKGTAEAYLGKTVQNAVITVSAYLMTLQDXPQRCRYHLR-LNVLRIIN 578
VLTKMK TAEAYLGK V +AV+TV AY Q + + L V+RIIN
Sbjct: 821 VLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIIN 872
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 128 bits (308), Expect = 6e-30
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = +1
Query: 61 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNXTTPSYVAFTDTERLIGDAAKNQVA 240
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGN TTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 241 MNP 249
MNP
Sbjct: 61 MNP 63
Score = 103 bits (247), Expect = 1e-22
Identities = 60/112 (53%), Positives = 69/112 (61%), Gaps = 25/112 (22%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPXXVVSDGGKPKIKVAYKGEDKTFFPEEV--- 416
P TIFDAKRLIGR+F+D V+ DMKHW VV++ G+PK+KV YKGE KTFF EEV
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNE 122
Query: 417 ----------------------SSMVLTKMKGTAEAYLGKTVQNAVITVSAY 506
SSMVL KMK TAEAYLG V +AV+TV AY
Sbjct: 123 AGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAY 174
Score = 78.2 bits (184), Expect = 6e-15
Identities = 41/60 (68%), Positives = 43/60 (71%)
Frame = +1
Query: 532 KDAGTISG*TFSESSMXPTAAAXAYGLDKXGTGXRNVLIFYLGGGTFDVSILTIEDGIFE 711
KDAG ISG PTAAA AYGLDK RNVLIF LGGGTFDVS+L+IEDGIFE
Sbjct: 252 KDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSIEDGIFE 311
Score = 51.6 bits (118), Expect = 6e-07
Identities = 31/57 (54%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +3
Query: 411 EVSSMVLTKMKGTAEAYLGKTVQNAVITVSAYLMTLQDXPQRCRYHLR-LNVLRIIN 578
++SSMVL KMK TAEAYLG V +AV+TV AY Q + + LNVLRIIN
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIIN 267
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 89.8 bits (213), Expect = 2e-18
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 4/218 (1%)
Frame = +1
Query: 67 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNXTTPSYVAFTDTERLIGDAAKNQVA 240
K +GIDLGTTYSCVG +Q G+++I +++ + PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 241 MNP-NKQYSMPNVSSDVSSKMLLCKPT*STGLXRLSVMEANLRSR*HIRVKTKPFSPRKS 417
+NP N Y +K L + + N + +P +
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 418 VPWCLRK*REL-PKLISAKLCRMQLSRFPRT**LSKTSHKDAGTISG*TFSESSMXPTAA 594
+ ++K R + + ++ + + +S + + A +++G T PTAA
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVINEPTAA 209
Query: 595 AXAYGLDKXGTGXRNVLIFYLGGGTFDVSILTIEDGIF 708
A AYGL K G NV++ LGGGT DVS+L I+ G+F
Sbjct: 210 ALAYGLHKK-EGVANVMVVDLGGGTLDVSLLNIQGGMF 246
Score = 52.0 bits (119), Expect = 5e-07
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +3
Query: 246 PQQTIFDAKRLIGRKFEDATVQADMKHWPXXVVSD-GGKPKIKVAYKGEDKTFFPEEVSS 422
P+ TI+DAKR IG+ F + K + V +D G V KG PEE+
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGG 151
Query: 423 MVLTKMKGTAEAYLGKTVQNAVITVSA-YLMTLQDXPQRCRYHLRLNVLRIIN 578
V+ K++ AE L TV AV++V A + + ++ + + VLR+IN
Sbjct: 152 YVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQRNATVKAASLAGITVLRVIN 204
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 68.9 bits (161), Expect = 4e-12
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Frame = +3
Query: 249 QQTIFDAKRLIGRKFEDATVQADMKHWPXXVVS-DGGKPKIKVAYKGEDKTFFPEEVSSM 425
+ TI KR IGRKF D VQ ++ H P VV I+V Y G+ + F PE+V +M
Sbjct: 120 KNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAM 179
Query: 426 VLTKMKGTAEAYLGKTVQNAVITVSAYLMTLQDXPQRCRYHLR----LNVLRIIN 578
+ T++K TAE L V + VI+V +Y D +RC LN LR++N
Sbjct: 180 LFTRLKTTAEIALKTKVTDCVISVPSY---YTDRQRRCMLDASATAGLNCLRLMN 231
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 79 VGIDLGTTYSCVGVFQHGKVEIIANDQGNXTTPSYVAFTDTERLIGDAAKNQ 234
VG D+G + V + G +E +AN+ + TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/52 (46%), Positives = 36/52 (69%)
Frame = +3
Query: 366 IKVAYKGEDKTFFPEEVSSMVLTKMKGTAEAYLGKTVQNAVITVSAYLMTLQ 521
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITV A+ Q
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQ 53
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 130 GKVEIIANDQGNXTTPSYVAFTDTERLIGDAAKNQVAMNPNK---QYSMPNVSSDVSSKM 300
G IIAND G+ TP+ VAF+DTE+LI + N+ Q S V + + KM
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLIDKDGLPYYEVESNERNIQVSPKEVINMIYKKM 142
Query: 301 L 303
L
Sbjct: 143 L 143
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +1
Query: 640 VLIFYLGGGTFDVSILTIEDGIFE 711
+ ++ LGGGTFD+SIL I+ G+FE
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFE 25
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 35.5 bits (78), Expect = 0.043
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 360 PKIKVAYKGEDKTFFPEEVSSMVLTKMKGTAEAYLGKTVQNAVITVSAYLMTLQDXP-QR 536
P +K Y+ D TF PEE+ M+L + E + +++ V+TV + + R
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 537 CRYHLRLNVLRIIN 578
+ LNVL+I+N
Sbjct: 127 AAELVGLNVLQIMN 140
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 247 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 149
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 139 EIIANDQGNXTTPSYVAFT-DTERL 210
++I N +G+ TTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 357 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKGTAEAYLGKTVQNAVITVSAYLMTLQDXPQR 536
+PK K + E+ EE +M ++K LGK V+ + T +TL Q
Sbjct: 654 QPKFKKTKEEEEFDKLLEEADAMTQQEVKNVKNIKLGKNVKTQLYTCEPCNITLNSQKQM 713
Query: 537 CRYHLRL 557
++ L L
Sbjct: 714 SQHLLGL 720
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 48 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQXDHSVLCCVHRHRASHRRCR 224
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 225 QEPGGDEPQQTIFDA 269
G +P+ T F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 257 CLLGFIATWFLAASPMRRSVSVNAT*DGVVXLPWSLAMISTFPCWKTPTQEYVVPRSIPT 78
CLL I WF P+R S + VV S+ ++ F C P + P +IP+
Sbjct: 107 CLLLTIERWFAVVQPLRYQASFSKR--RVVVSLISVYCVACFLCCTLPFEVSFSPENIPS 164
>SB_36103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -3
Query: 497 NRDNCILHSFAEISFGSSLHFRKHHGTDFLGEKGFVFTLICYLDLRFASITDNLXRPVLH 318
N C+L EI L K G F+G+ G +FTL C D+ AS P ++
Sbjct: 11 NEQECLLAQ-CEIVLREDLKNLKIPGGQFIGKAGEIFTL-CDRDMDVASW--KCFDPAMY 66
Query: 317 VGL 309
VG+
Sbjct: 67 VGI 69
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 454 SAVPFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTXXGQCFMSACTVASSNLRP 281
S F+F ST + +S +KV+ SPL + + P+ G S C V + + P
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNVQNLSRCP 1165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,740,628
Number of Sequences: 59808
Number of extensions: 498886
Number of successful extensions: 1454
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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