Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0681
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    27   2.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   2.1  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    26   6.5  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    26   6.5  

>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 457 LHVGPRGCGRGHAEDARPQEHRQARPGPVPRAEA*AGHSR 338
           LH+        H    RP   R  RP P  RA A AG+ R
Sbjct: 80  LHLPAEVVPATHKRQVRPTAPRAGRPEPRERASADAGYRR 119


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 389 LPMFLRSCIFCMASPTSSRAHVESTMGLTLPCAHRVK 499
           LPM ++   FC+A+PT+ +  + +   L LP    ++
Sbjct: 711 LPMHMQRLFFCLANPTAEQ-RITAQEALNLPFVQEIE 746


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 474 VKPIVDSTWALEDVGEAMQKMHDRKNIGKLVL 379
           +K ++DS +  ED  EA  ++   +  GK+++
Sbjct: 313 IKTVIDSVYDFEDTVEAFNRLMTHRCKGKVII 344


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 474 VKPIVDSTWALEDVGEAMQKMHDRKNIGKLVL 379
           + P+VD  +  + + EA +    + +IGK+VL
Sbjct: 312 IHPVVDKVFPFDQLKEAYEYQWSQAHIGKVVL 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,272
Number of Sequences: 5004
Number of extensions: 34281
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)