Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0681
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 39 0.005
09_04_0375 - 17055024-17055956,17056045-17056296 33 0.18
04_03_0629 + 18179065-18179148,18180146-18180287,18180987-181810... 32 0.42
10_08_0466 + 18141369-18141432,18141628-18141711,18142603-18142793 30 2.2
05_01_0290 + 2270749-2271037,2272227-2272363,2272660-2272805,227... 29 3.9
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 29 3.9
08_02_1290 - 25927667-25928950 29 5.2
12_01_0881 + 8485643-8485731,8486384-8486458,8487094-8487172,848... 28 6.8
06_03_0256 - 18841627-18841993,18842087-18842415,18842512-188427... 28 6.8
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -1
Query: 504 SVFTLWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLDP 373
+V+ QGKVKP++ T+ L + EA + M + +IGK++L P
Sbjct: 295 NVWPAVVQGKVKPVIYKTFPLSEAAEAHKLMEESSHIGKILLIP 338
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 33.5 bits (73), Expect = 0.18
Identities = 24/87 (27%), Positives = 34/87 (39%)
Frame = -3
Query: 625 GGKWTSVSDQTVRREQEPGGLELRHLCSSTGAGTRCGAPAQRLHSVGAGQGQAHRRLHVG 446
GG TS S T+ E P + +HL AG + G A + + +H+
Sbjct: 282 GGSTTSSSSLTIAEEPSPPPQQ-QHL-----AGEKSGGEAGNSSAARSSAPTKLFGVHLS 335
Query: 445 PRGCGRGHAEDARPQEHRQARPGPVPR 365
CG G + P+EH P PR
Sbjct: 336 AAPCGAGSKRASSPEEHPPTSPATKPR 362
>04_03_0629 +
18179065-18179148,18180146-18180287,18180987-18181078,
18181272-18181964
Length = 336
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 492 LWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLD 376
L +GK++ +VDS + L D +A QK D GK+V++
Sbjct: 295 LVGEGKLRTVVDSRFPLGDAAKAWQKSIDGHATGKIVVE 333
>10_08_0466 + 18141369-18141432,18141628-18141711,18142603-18142793
Length = 112
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -3
Query: 532 AGTRC--GA-PAQRLHSVGAGQGQAHRRLHVGPRGCGRGHAEDAR 407
+GTRC G P L +G G RR PR G GHA AR
Sbjct: 38 SGTRCYEGCNPPGLLRPASSGGGHERRRGRDPPRAVGLGHARAAR 82
>05_01_0290 +
2270749-2271037,2272227-2272363,2272660-2272805,
2272853-2272877
Length = 198
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 514 APAQRLHSVGAGQGQAHRRLHVGPRGC-GRGHAEDARPQEHRQARPG 377
APA RL S AG G G R GRG +DA P++ R A G
Sbjct: 32 APAPRLRSTIAGGGGGGGGGDDGQRKTKGRGFRDDAAPRDSRLAGAG 78
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +3
Query: 345 WPA*ASARGTGPGRACRCSCGRASSAWPRPHPRGPTWSRRWA*PCPAPTE*RRCAG 512
WP+ G C CSCG+A P P P P + PC P + C G
Sbjct: 262 WPSDCCCHHGHGGCHC-CSCGKAPEPAPAPAPPPPQYI-----PCYPPQQPYPCGG 311
>08_02_1290 - 25927667-25928950
Length = 427
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -3
Query: 553 HLCSSTGAG--TRCGAPAQRLHSVGAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQ 389
H ++ G TRC P +RL G G A R LHV P G HA+ A+ + HR+
Sbjct: 321 HSAAAAGVAITTRCLYP-RRL--AGRLVGAAQRLLHV-PLRRGEDHAQSAKDRVHRE 373
>12_01_0881 +
8485643-8485731,8486384-8486458,8487094-8487172,
8487521-8487705,8487973-8488028,8489808-8489893
Length = 189
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 535 GAGTRCGAPAQRLHSVGAGQGQAHRRLHVGPRGC 434
GAG RCG + L SV + + +HV RGC
Sbjct: 45 GAGLRCGWDVRLLRSV-QSRAKEDLAIHVSQRGC 77
>06_03_0256 -
18841627-18841993,18842087-18842415,18842512-18842749,
18844091-18844373,18844773-18844989,18845067-18845360
Length = 575
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 535 GAGTRCGAPAQRLHSVGA-GQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGP 374
GA C A ++ VGA G G++ RR H PR HA +P+ R RP P
Sbjct: 42 GAWQLCFATSKS--KVGALGDGRSRRR-HTEPRPHKLCHARYPQPRAQRLVRPHP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,447,347
Number of Sequences: 37544
Number of extensions: 332123
Number of successful extensions: 1279
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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