Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0681
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            65   5e-11
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     33   0.32 
SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)              30   1.7  
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)           30   1.7  

>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 29/46 (63%), Positives = 36/46 (78%)
 Frame = -1

Query: 501 VFTLWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLDPSLE 364
           V  L+ +G VKP++DS  ALE+ G+AMQKMHDRKNIGK+VL P  E
Sbjct: 326 VMKLYNEGFVKPVIDSVLALEEAGKAMQKMHDRKNIGKMVLSPMKE 371


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 489 WAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVL 379
           ++ G++KP++DS   ++ + EA  +M    N GK+V+
Sbjct: 270 FSSGELKPLIDSILPMDRIQEAHTRMEQNLNTGKIVI 306


>SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)
          Length = 332

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 562 ELRHLCSSTGAGTRCGAPAQRLHSVGAGQGQAHRRLHVG-PRGCG 431
           EL H   S G  T C +     HS G GQ   HR  H     GCG
Sbjct: 239 ELNHTSFSEGQNTNCAS-----HSHGGGQNAEHRGCHSDVQNGCG 278


>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
          Length = 796

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = -3

Query: 628 RGGKWTSVSDQTVRREQEPGGLELRHLCSSTGAGTRCGAPAQR--LHSVGAG-QGQAHRR 458
           RGG+WT  S +T R+      + L  L  + GAG R      R  L   G   +      
Sbjct: 33  RGGEWTVPSRETARQRAHVTTILLELLDVNQGAGGRVTLHVHREALRQRGIDPKNIPFNA 92

Query: 457 LHVGPRGCGR 428
           L VGP  CG+
Sbjct: 93  LIVGPTSCGK 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,099,444
Number of Sequences: 59808
Number of extensions: 329753
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)