Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0681
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    29   4.6  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    29   4.6  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    29   4.6  
AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      29   4.6  
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    28   8.0  

>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -3

Query: 526 TRCGAPAQRLHSVGAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVPR 365
           TR     Q+L SVGA    AH   H  P   G  H     PQ H      P+P+
Sbjct: 298 TRPQPMPQQLPSVGATF--AHPLPHQAPHNPGVSHPYSIAPQTHYPLNMNPIPQ 349


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -3

Query: 526 TRCGAPAQRLHSVGAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVPR 365
           TR     Q+L SVGA    AH   H  P   G  H     PQ H      P+P+
Sbjct: 394 TRPQPMPQQLPSVGATF--AHPLPHQAPHNPGVSHPYSIAPQTHYPLNMNPIPQ 445


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -3

Query: 526 TRCGAPAQRLHSVGAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVPR 365
           TR     Q+L SVGA    AH   H  P   G  H     PQ H      P+P+
Sbjct: 366 TRPQPMPQQLPSVGATF--AHPLPHQAPHNPGVSHPYSIAPQTHYPLNMNPIPQ 417


>AF125951-1|AAD14690.3|  326|Caenorhabditis elegans Hypothetical
           protein D2063.1 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 444 LEDVGEAMQKMHDRKNIGKLVLDPSL 367
           LEDV E   KMHD K   ++V+D SL
Sbjct: 301 LEDVAEVYTKMHDGKINSRVVVDFSL 326


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -3

Query: 526 TRCGAPAQRLHSVGAGQGQAHRRLHVGPRGCGRGHAEDARPQEHRQARPGPVPR 365
           TR     Q+L SVGA    AH   H  P   G  H     PQ H      P+P+
Sbjct: 298 TRPQPMPQQLPSVGATF--AHPLPHQAPHNPGVSHPYSIAPQTHYPLNMNPIPQ 349


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 459 DSTWALEDVGEAMQKMHDRKNIG 391
           DS W +E + E ++  H R+N G
Sbjct: 119 DSMWQMEQIMELIENTHSRRNFG 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,142
Number of Sequences: 27780
Number of extensions: 227367
Number of successful extensions: 714
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)