Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0681
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogen...    30   1.4  
At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogen...    28   7.5  

>At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogenase
           family protein low similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430];
           contains Pfam profile PF00107: oxidoreductase,
           zinc-binding dehydrogenase family
          Length = 329

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 483 QGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLDP 373
           +GKVK ++DS   L    +A  K  D    GK++++P
Sbjct: 293 EGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329


>At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogenase
           family protein Pig3 Homo sapiens, PID:G2754812; contains
           Pfam zinc-binding dehydrogenase domain PF00107
          Length = 325

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 480 GKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLD 376
           GKVKP++     L    E    M    +IGK++L+
Sbjct: 290 GKVKPVIYKYLPLSQAAEGHSLMESSNHIGKILLE 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,220,512
Number of Sequences: 28952
Number of extensions: 216141
Number of successful extensions: 566
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)