Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0679
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    24   0.99 
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    23   2.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   3.0  

>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 573 GYSLLDSLKIWXHCMVVQWXPFVYPYDELFDTE 475
           GY L     +  H   + + P +YP  E FD +
Sbjct: 78  GYKLRKGTILQLHIYDLHYNPVIYPEPEKFDPD 110


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = -2

Query: 579 CRGYSLLDSLKIWXHCMVVQWXPFVYPYDELFDTE 475
           C G  L  S     H   +   P +YP  E FD E
Sbjct: 93  CNGLKLPKSTITHLHIYDLHHNPDIYPDPEKFDPE 127


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 570 IPYIKKIGYNPVCRFRXHFGXH 635
           +P++ +   +P   FR HF  H
Sbjct: 149 VPFVTQCPIHPGMTFRYHFNVH 170


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,161
Number of Sequences: 336
Number of extensions: 2794
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)